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Rhodamine rx

Manufactured by Jackson ImmunoResearch

Rhodamine-RX is a fluorescent dye label produced by Jackson ImmunoResearch. It has a peak excitation at 570 nm and a peak emission at 590 nm, making it suitable for detection and visualization applications. The dye can be conjugated to a variety of biomolecules, including proteins, antibodies, and nucleic acids, to enable their detection and tracking in various experimental and analytical settings.

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4 protocols using rhodamine rx

1

Visualizing Protein Expression in Cells

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Expression and distribution of various proteins were visualized by indirect immunofluorescence. Cells were fixed for 10 min in PBS/4% (w/v) paraformaldehyde, and permeabilized for 7 min using PBS/0.2% (v/v) Triton X-100. Non-specific sites were blocked with PBS/10% goat serum (1 hr, room temperature [RT]) prior to incubation with antibodies diluted in PBS/5% goat serum (1 hr, RT, each). F-actin was detected by incubating cells with TRITC-phalloidin (Sigma) for 1 hr at RT, and nuclei were stained using 4 μg/mL Hoechst 33,258 (Sigma) for 5 min at RT. Cells were washed in PBS before mounting in ProLong Gold Antifade (Molecular Probes). Images were collected on a Nikon A1 confocal or a Leica TCS SP5 AOBS inverted confocal microscope as previously described (Akhtar and Streuli, 2013 (link)). Non-biased cell counts were performed by concealing the identity of each slide.
Immunofluorescence of mammary tissue was performed on paraffin-embedded tissue (5 μm) or cryosections (10 μm), and the luminal surface was detected with wheat germ agglutinin-488, or -647 (Invitrogen, W11261, W32466) and imaged using confocal microscopy. Primary antibodies used for immunofluorescence are indicated in Supplemental Experimental Procedures. Secondary antibodies conjugated to Cy2, Rhodamine-RX, and Cy5 (Jackson ImmunoResearch).
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2

Immunofluorescence Imaging of Mammary Tissue

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Expression and distribution of various proteins were visualised by indirect immunofluorescence. Cells were fixed for 10 min in PBS/4% (w/v) paraformaldehyde and permeabilised for 7 min using PBS/0.2% (v/v) Triton X100. Nonspecific sites were blocked with PBS/10% goat serum (1 h, RT) prior to incubation with antibodies diluted in PBS/5% goat serum (1 h, RT, each). EdU was detected using the Click-iT EdU Alexa Fluor 647 imaging kit (Life Technologies), and nuclei were stained using 4 μg/ml Hoechst 33258 (Sigma) for 5 min at RT. Cells were washed in PBS before mounting in prolong gold antifade (Molecular Probes). Images were collected on a Nikon A1 confocal or a Leica TCS SP5 AOBS inverted confocal as previously described [15 (link)]. Nonbiased cell counts were performed by concealing the identity of each slide.
Immunostaining of mammary tissue was performed on paraffin-embedded tissue (5 μm) or cryosections (10 μm) as previously described [9 (link)]. Wheat germ agglutinin (WGA)-488, or -647 (Invitrogen, #W11261, #W32466), was used for staining the epithelium and imaged using confocal microscopy. Primary antibodies used for immunofluorescence are indicated in S2 Table. Secondary antibodies were conjugated to Cy2, Alexa-488, Rhodamine-RX, Cy5, Alexa-647 (Jackson Immunoresearch). Nonbiased image analysis was performed in 5 to 10 microscopy fields per mouse.
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3

Decidual Immune Cell Characterization

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Sections of control and infected decidua were immunostained for immunofluorescence using standard methods and mounted in VectaShield with DAPI (Vector Laboratories, Burlingame, CA). Antibodies used include monoclonal antibody CH443 targeting HCMV IE, produced in the Pereira laboratory, and the following antibodies obtained from commercial sources: mouse and rabbit anti-CD3 mAbs (Abeam, Cambridge, United Kingdom), rabbit anti-CD4 mAb (Abeam, Cambridge, United Kingdom), rat anti-CD4 mAb (BioRad Laboratories, Hercules, CA), mouse anti-CD8 mAb (BD Pharmingen, San Diego, CA), rabbit anti-IFN-γ polyclonal antibody (Abcam, Cambridge, MA) mouse anti-granulysin mAb (Santa Cruz Biotechnology, Dallas, TX), rabbit and mouse anti-CD32A (Abeam, Cambridge, United Kingdom), goat anti-CD56 polyclonal antibody (R&D Systems, Minneapolis, MN), rabbit anti-CD163 polyclonal antibody (Abeam, Cambridge, United Kingdom), rabbit anti-CD209 (DC-SIGN) polyclonal antibody (Abeam, Cambridge, United Kingdom), rabbit anti-cytokeratin 7 polyclonal antibody (Novus Biologicals, Centennial, CO), mouse anti-cytokeratin 7 mAb (Dako Products, Santa Clara, CA), rabbit anti-vimentin mAb (Abeam, Cambridge, United Kingdom), mouse anti-vimentin IgM mAb (Sigma-Aldrich, St. Louis, MO). Fluorescently labeled secondary antibodies (FITC, Rhodamine RX, and Cy5) were obtained from Jackson Immunoresearch (West Grove, PA).
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4

Immunofluorescence Visualization of Protein Expression

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Expression and distribution of various proteins were visualised by indirect immunofluorescence. Cells were fixed for 10 min in PBS / 4% (w/v) paraformaldehyde, and permeabilised for 7 min using PBS / 0.2% (v/v) Triton X100. Non-specific sites were blocked with PBS / 10% goat serum (1h, RT) prior to incubation with antibodies diluted in PBS / 5% goat serum (1h, RT, each). EdU was detected using the Click-iT EdU Alexa Fluor 647 imaging kit (Life Technologies) and nuclei were stained using 4 µg/ml Hoechst 33258 (Sigma) for 5 min at RT. Cells were washed in PBS before mounting in prolong gold antifade (Molecular Probes). Images were collected on a Nikon A1 confocal or a Leica TCS SP5 AOBS inverted confocal as previously described (15) . Non-biased cell counts were performed by concealing the identity of each slide.
Immunostaining of mammary tissue was performed on paraffin-embedded tissue (5µm) or cryosections (10µm) and luminal surface was detected with wheat germ agglutinin-488, or -647 (Invitrogen, #W11261, #W32466) and imaged using confocal microscopy. Primary antibodies used for immunofluorescence are indicated in Supplementary table 2. Secondary antibodies were conjugated to Cy2, Alexa-488, Rhodamine-RX, Cy5, Alexa-647 (Jackson Immunoresearch) and horse-radish peroxidase.
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