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3 protocols using kanamycin

1

Generating Transgenic Tobacco Plants

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Transgenic tobacco plants were generated through the agrobacterium-mediated transformation method as previously described (Horsch et al. 1989 ). Fully expanded unstressed leaves from a sterile cultured Nicotiana tabacum cv.Xanthi plant were cut into squares with diameter of 0.5–1.0 cm, and the leaf disks were incubated with LBA4404 agrobacterium harboring a plant expression vector for 10 min. After the inoculation, the disks were placed with their adaxial surfaces facing downwards on co-cultivation medium [3% sucrose, 4.4 g/L MS salt (Duchefa, Netherlands), 2 mg/L 2,4-D (Duchefa, Netherlands), and 200 μM acetosyringone (MBcell, Korea), pH 5.8]. After 2 days of co-cultivation, the disks were transferred into shoot induction medium [3% sucrose, 4.4 g/L MS salt, 50 mg/L kanamycin (Biosesang, Korea), 0.01 mg/L NAA (Duchefa, Netherlands), 0.1 mg/L GA3 (Duchefa, Netherlands), 1 mg/L zeatin (Duchefa, Netherlands), and 250 mg/L cefotaxime (Biosesang, Korea), pH 5.8]; the explants were transferred into fresh shoot induction medium every 2–3 weeks. The regenerated shoots were transferred to root induction medium (3% sucrose, 4.4 g/L MS salt, 50 mg/L kanamycin, and 300 mg/L cefotaxime, pH 5.8). The regenerated plantlets were transferred to soils.
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2

Plasmid Transfection and Protein Expression

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We purchased miR-145 from Genolution Pharmaceuticals (Seoul, Korea). We transformed plasmid gWiz-luciferase (Aldevron, USA) into the competent cells, Escherichia coli DH5α, using the heat shock method. gWiz-luciferase was then propagated in bacterial cultures grown in Luria-Bertani media (Becton and Dickinson company, Franklin Lakes, NJ, USA) containing 100 µg/mL of kanamycin (Biosesang Inc., Sungnam, Korea), and purified using a mini DNA-spin kit (iNtRON Biotechnology, Seongnam, Korea). We purchased an antibody for c-Myc and green fluorescent protein (GFP) from Genolution Pharmaceuticals (Seoul, Korea). We obtained branched PEI-linked ssPEI from Pohang University of Science and Technology. We purchased HA from Lifecore Biomedical (Chaska, MN, USA). We purchased 1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide from TCI (Tokyo, Japan). Finally, we purchased 3-hydroxytyramine hydrochloride and 2-(N-Morpholino) ethanesulfonic acid (MES) from Sigma Aldrich (St. Louis, MO, USA) and used them without further purification.
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3

Agrobacterium-mediated Transient Expression of CRISPR sgRNAs

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The four plasmids harboring different sgRNAs were transformed into Agrobacterium tumefaciens strain GV3101. The transformed GV3101 were incubated in yeast extract peptone (YEP) liquid media [10 g/l of yeast extract (Sigma-Aldrich, USA), 10 g/l of peptone (Sigma-Aldrich, USA), and 5 g/l of NaCl (Sigma-Aldrich, USA), pH 7.2] supplemented with 50 mg/l rifampicin (Duchefa, Netherlands) and 50 mg/l kanamycin (Biosesang, Korea) for overnight at 28°C. In total, 1 ml of overnight culture was transferred into 20 ml fresh YEP media supplemented with 50 mg/l rifampicin and 50 mg/l kanamycin and incubated for 16 h at 28°C. The bacterial solution was centrifuged at 3,500 rpm for 20 min, and the resultant bacterial pellet was resuspended in 10 mM MgCl2 (Sigma-Aldrich, USA) solution supplemented with 200 μM acetosyringone (Sigma-Aldrich, USA) (final OD600 = 0.8–0.9) and incubated at room temperature for 3 h. The bacterial solution was infiltrated into tomato cotyledons using a needless syringe. The ~50 infiltrated cotyledons were harvested 5 days after infiltration for genomic DNA extraction and further PCR analysis. The efficiency of four sgRNAs was evaluated by sequencing analysis of TA-cloned PCR products.
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