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194 protocols using optical microscope

1

Histological Analysis of Liver Lipids

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The liver tissue samples were embedded in paraffin, sectioned into 4-μm slices, and stained with hematoxylin and eosin (H&E). Oil red O staining was performed using frozen liver tissue sections, LO2 cells, and LO2 stable cell lines of FST overexpression or knockdown. The cells were treated as previously described. The stained area in 10 random fields was quantified using an optical microscope (Zeiss, Germany) and Image-Pro Plus 6.0 software (Media Cybernetics, USA).
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2

Immunohistochemical and Immunofluorescent Analysis of Follistatin in Liver Tissue

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Paraffin-embedded liver sections were deparaffinized, hydrated, thermally repaired with 0.01 M sodium citrate buffer, and then incubated in 3% hydrogen peroxide for 10 min to eliminate endogenous peroxidase activity. Next, the sections were incubated with 5% BSA for 1 h at 37°C and primary antibody against FST (#60060-1-Ig, Proteintech, China) at 4°C overnight and then washed with phosphate-buffered saline three times.
For IHC staining, the sections were incubated with secondary antibody and StreptAvidin—Biotin Complex (SABC) for 30 min each (#SA1050, BOSTER, China), and then 3.3’-diaminobenzidine (DAB; #AR1022, BOSTER, China) was added for 3 min. Finally, hematoxylin staining was performed for cell counting. The IHC results were based on 10 random fields in each section using an optical microscope (Zeiss, Germany).
For IF staining, fluorescent secondary antibody (Alexa Fluor® 488-labeled goat anti-mouse IgG(H+L); #ab150113, Abcam) was added for 1 h at room temperature, and then the cell nuclei were counterstained with 4’,6-diamidino-2-phenylindole (DAPI) for 5 min. The IF images were obtained using a confocal microscope (Zeiss, Germany).
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Quantitative Osteoclast Evaluation

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Osteoclasts were fixed in 4% formaldehyde and osteoclasts differentiation was evaluated with a TRAP detection kit (Sigma-Aldrich, USA). Stained osteoclasts were observed with an optical microscope (ZEISS, Germany) and quantified by Image-J software. Total protein was extracted and the TRAP activity was measured by the TRAP assay kit (Beyotime Technology Inc, China).
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Evans Blue Staining for Infarct Size

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Mice were injected with Evans's blue (1%; Solarbio, China) through the abdominal aorta to stain the noninfarcted areas. Hearts were cut into 1 mm-thick sections and stained for 15 min with 2% triphenyltetrazolium chloride (TTC; Solarbio) at 37°C. An optical microscope was used to capture the images (ZEISS, Germany).
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5

Transwell Invasion Assay with Matrigel

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LCC and TU686 cells were inoculated into 24 -well transwell chambers with polycarbonate membrane (353,097) (Corning Life Science, Acton, MA) to evaluate invasion capacities under the function of Matrigel (Corning, U.S.) or without it. The upper chamber was injected with cells in a serum-free medium at a density of 4 × 105 cells/well and the outer chamber got filled with the complete-culture medium. After a 12-h culture process, cells adhered to the underside of the chamber for 30 min were fixed by paraformaldehyde, and later got calculated under an optical microscope (Zeiss, Germany).
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6

Histological Analysis of Intestinal Morphology

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The morphology of the jejunum and ileum was analyzed according to the hematoxylin and eosin (H&E) staining method described by Wang et al. (2009 (link)). The sliced samples were viewed under an optical microscope (Carl Zeiss Inc., Oberkochen, Germany). Digital images were captured using a color video camera Sony 3CCD-VX3 camcorder (Sony Corporation, Tokyo, Japan). Villus height and crypt depth were measured using the image analysis software (Intronic GmbH & Co., Rothenstein, Berlin, Germany).
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7

Quantifying Angiogenesis and Proliferation in Grafts

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Newly formed endothelial surface marker CD31 and proliferating cell nuclear antigen (PCNA) were detected by IF to assess angiogenesis and proliferation of the grafts. Briefly, the sections were blocked in a solution containing 0.2% TritonX-100 and 3% goat serum for 1.5 h and then incubated with anti-CD31 antibody (1:800, Servicebio, China) and anti-PCNA antibody (1:800, Servicebio, China) diluted in antibody diluent overnight at 4 °C followed by incubation with corresponding fluorescently labeled secondary antibody (1:400, Servicebio, China) at 37 °C for 1.5 h. DAPI was routinely used for nuclei counterstaining. The number of CD31-labeled neovascularization from each sample was calculated based on the five randomly selected regions of three discontinuous sections. Furthermore, we applied double-staining with CM-Dil and CD31 to analyze the differentiation of ADSCs in 3D-bioprinted engineering ovary group, and the fresh-frozen sections were obtained from the samples at 4 weeks after transplantation. The specific staining method was performed as described previously. Fluorescent images were acquired using an optical microscope (Zeiss, Germany).
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8

Collagen Sprout Assay for Cell Migration

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Cell migration and proliferation were analyzed using the collagen sprout assay [12 (link)]. HaCaT cells (2.5 × 104 cells/mL) were mixed with type I collagen, 10× DMEM medium, and 1 N NaOH (pH 7.2). The mixture was spotted in each well of 24-well cell culture plates. After drying for 20 min, spots were treated with or without APMFAb, incubated at 37 °C in CO2 incubator for 48 h, and then fixed and stained using Diff-Quik solution. The spot images were photographed using an optical microscope (Carl Zeiss, Jena, Thuringen, Germany) (×100). Lengths of sprouts were measure using Image J software (Version Java 1.8.0., NIH, Bethesda, MD, USA).
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9

Evaluating Microneedle Skin Penetration

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To examine whether the MNs are mechanically strong enough to penetrate the skin, a mouse cadaver skin model was used. A MNs patch was pushed into the mouse cadaver skin by a compression force station (Instron, USA) with a force of 20 N for 5 s. Trypan blue, a dye that could stain damaged cell membranes, was then used to stain the penetrated tissue for 5 min. After removing excess trypan blue, the skin was imaged using an optical microscope (Zeiss, Sweden) to check for the sign of penetrating stratum corneum (blue dots). The cadaver skin of a mouse with MNs inserted was freshly frozen in OCT compound, and 10 μm thick cross-sectional slices were visualized on the Zeiss Axio Observer Z1 microscope (Carl Zeiss, Germany).
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10

Neutrophil Chemotaxis Assay Protocol

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Neutrophil migration was evaluated in 24-well disposable chemotactic plates (Neuro Probe) according to the manufacturer’s instructions, in the absence and presence of 10 nmol/L fMLP (Sigma Aldrich). Briefly, flat-bottomed chambers were filled with the chemotactic agent - fMLP in phosphate-buffered saline (PBS) containing 0.01% albumin. Chemotactic membranes with a pore size of 5 μm were fixed to the filter seat. The chamber assembly with neutrophils (1 × 106 per mL) was incubated in a humidified 5% CO2 atmosphere at 37°C for 60 minutes. After incubation, the chamber was disassembled, and the cells that migrated, crossing the plasma membrane, were counted directly in the Neubauer chamber in an optical microscope (Carl Zeiss). Chemotactic responses were defined as the mean number of migrated neutrophils. The same assay was used in our previous study (46 (link)).
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