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938 protocols using l glutamine

1

Cell Culture Protocols for Breast Cancer Cell Lines

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MDA-MB-231, Hs578t, MCF-7, and MDA-MB-468 cells were purchased from American Type Culture Collection (ATCC). MDA-MB-231 and MCF-7 were cultured in Dulbecco’s Modified Eagle Medium (DMEM) (Corning CellGro., Manassas, VA, USA) supplemented with 10% fetal bovine serum (Sigma-Aldrich, St. Louis, MO, USA), 1% pen–strep, and 1% L-glutamine (Corning, CellGro). MDA-MB-468 was cultured in DMEM (Corning CellGro) supplemented with 10% fetal bovine serum, 1% pen–strep, 1% L-glutamine, 1% sodium pyruvate, and 1% Minimum Essential Medium (MEM) amino acids (Corning CellGro). Hs578t was cultured in MEM supplemented with 10% fetal bovine serum, 1% pen–strep, and 1% L-glutamine (Corning CellGro). SUM159PT cells were obtained from Asterand and cultured in Ham’s/F-12 (Corning CellGro) supplemented with 10% fetal bovine serum, 1% pen–strep, 1% L-glutamine, 10 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), 1 μg/mL hydrocortisone, and 5 μg/mL insulin. All cell lines were maintained in a humidified incubator at 5% CO2 and 37 °C.
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Cell Culture Conditions Across Cell Lines

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All human cell lines used in this study were maintained at 37°C with 5% CO2. OCI-LY1 cells were cultured in IMDM (Gibco) supplemented with 10% FetalPlex serum (Gemini) 1% L-Glutamine (Corning), and 1% Penicillin Streptomycin (Gibco). NU-DUL1 and SU-DHL-4 cells were cultured in RPMI 1640 (Gibco) supplemented with 10% FetalPlex serum (Gemini) 1% L-Glutamine (Corning), and 1% Penicillin Streptomycin (Gibco). OCI-LY7 cells were cultured in IMDM (Gibco) supplemented with 10% heat inactivated FBS (R&D Systems) 1% L-Glutamine (Corning), and 1% Penicillin Streptomycin (Gibco). 293FTs were a gift from the Ethan Lee lab and were cultured in DMEM (Corning) supplemented with 10% heat inactivated FBS (R&D Systems), 1% L-Glutamine (Corning), and 0.5% Penicillin Streptomycin (Gibco). S2 cells were cultured in Schneider’s media supplemented with 10% heat inactivated FBS (R&D Systems) and 1% Penicillin Streptomycin (Gibco) in the dark at room temperature (∼22°C).
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3

Culturing Wolbachia and Insect/Mammalian Cells

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Wolbachia (a generous gift from Dr. Horacio Frydman, Boston University) were grown in 1X Minimal Essential Medium (Corning) supplemented with 5% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). Aa23 Aedes albopictus cells with and without Wolbachia wAlbB (a generous gift from Dr. Horacio Frydman, Boston University) were grown at 24 ºC in Schneider's insect media (Sigma-Aldrich) supplemented with 20% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). JW18 Drosophila melanogaster cells with and without Wolbachia wMel were grown at 24 ºC in Shields and Sang M3 insect media (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum, 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). Aedes albopictus C636 cells and mammalian BHK-21 and Vero cells were grown at either 28ºC (C6/36) or 37 ºC (BHK/Vero) under 5% CO2 in 1X Minimal Essential Medium (Corning) supplemented with 10% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillinstreptomycin-antimycotic (Corning).
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Cell culture conditions for Aedes, Drosophila, and BHK

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RML12 Aedes albopictus cells with and Wolbachia-free wMel was grown at 24°C in Schneider’s insect media (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning), and penicillin-streptomycin-antimycotic (Corning). C7/10 Aedes albopictus cells with and Wolbachia-free were grown at 27°C under 5% ambient CO2 in 1X Minimal Essential Medium (Corning) supplemented with 5% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). Vertebrate baby hamster kidney fibroblast or BHK-21 cells were grown at 37°C under 5% ambient CO2 in 1X Minimal Essential Medium (Corning) supplemented with 10% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). JW18 Drosophila melanogaster cells with and without Wolbachia wMel were grown at 24°C in Shield and Sang M3 insect media (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum, 1% each of L-Glutamine (Corning), non-essential amino acids (Corning), and penicillin-streptomycin-antimycotic (Corning).
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AAV Production and Neutralization Assays

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For AAV production, Human Embryonic Kidney (HEK) 293A cells (Life Technologies) were maintained in Dulbecco’s Modified Eagle Medium (DMEM) containing 4.5 g/L glucose, L-glutamine, and sodium pyruvate supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin/streptomycin and 1% L-glutamine (Corning Cellgro; Media Tech). For AAV neutralization assays, Chinese Hamster Ovary (CHO-K1) cells (American Type Culture Collection; ATCC) were grown in Ham’s F12K (Kaighn’s Modified) Medium (Corning Cellgro; Media Tech) supplemented with 10% FBS, 1% penicillin/streptomycin and 1% L-glutamine (Corning Cellgro; Media Tech).
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Cell Culture Conditions for Various Cancer Cell Lines

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HeyA8 (RRID:CVCL_8878) and HeyA8 CD95 knock-out cells, HCT116 (ATCC #CCL-247; RRID:CVCL_0291) and HCT116 Drosha knock-out and Dicer knock-out cells, MCF-7 cells (ATCC #HTB-22; RRID:CVCL_0031), and 293T (ATCC #CRL-3216; RRID:CVCL_0063) cells were cultured as described previously (Putzbach et al., 2017 (link)). The MCF-7 CD95 knock-out and deletion cells were cultured in RPMI 1640 medium (Cellgro #10–040 CM), 10% heat-inactivated FBS (Sigma-Aldrich), 1% L-glutamine (Mediatech Inc), and 1% penicillin/streptomycin (Mediatech Inc). H460 (ATCC #HTB-177; RRID:CVCL_0459) cells were cultured in RPMI1640 medium (Cellgro Cat#10–040) supplemented with 10% FBS (Sigma Cat#14009C) and 1% L-glutamine (Corning Cat#25–005). 3LL cells (ATCC #CRL-1642; RRID:CVCL_4358) were cultured in DMEM medium (Gibco Cat#12430054) supplemented with 10% FBS and 1% L-glutamine. Mouse hepatocellular carcinoma cells M565 cells were described previously (Ceppi et al., 2014 (link)) and cultured in DMEM/F12 (Gibco Cat#11330) supplemented with 10% FBS, 1% L-glutamine and ITS (Corning #25–800-CR). All cell lines were authenticated using STR profiling and tested monthly for mycoplasm using PlasmoTest (Invitrogen).
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Cell Culture Conditions for Common Cell Lines

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MCF7 and HEK293T cells were cultured in high glucose Dulbecco's modified Eagle's medium (DMEM) base media with sodium pyruvate and l-glutamine (Corning) supplemented with additional 100 mM l-glutamine, 10% fetal bovine serum (FBS; Gibco), and antibiotics (100 U/mL penicillin + 100 μg/mL streptomycin from Life Technologies, Inc.). T47D were cultured in RPMI1640 base media with l-glutamine (Corning) supplemented with additional 100 mM l-glutamine, 5 µg/mL insulin (Roche), 10% FBS, and antibiotics. MCF10A were cultured in DMEM/F12 50/50 with l-glutamine (Corning), 5% horse Serum, 20 ng/mL epidermal growth factor (Peprotech), 0.5 mg/mL hydrocortisone (Sigma), 100 ng/mL cholera toxin (Sigma), 10 µg/mL insulin, and antibiotics. Caco-2 were cultured in minimum essential media (MEM) base media with l-glutamine (Corning), 20% FBS, and antibiotics. MDCK cells were cultured in high glucose DMEM base media with sodium pyruvate and l-glutamine (Corning), 10% FBS, and antibiotics.
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8

Cell Culture Conditions for KSHV Studies

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BJAB-KSHV.219 cells (a kind gift from Thomas Schulz) [52 (link)] were maintained in RPMI media (Corning) supplemented with 10% FBS, 1% penicillin and streptomycin (Corning), 1% L-glutamine (Corning), and 4μg/mL puromycin (Corning). 293-KSHV.219 cells were previously described [24 (link)], and were maintained in DMEM media (Corning) supplemented with 10% FBS, 1% penicillin and streptomycin, 1% L-glutamine, and 1μg/mL puromycin. PEL cells were maintained in RPMI media supplemented with 10% FBS, 1% penicillin and streptomycin, 1% L-glutamine, 0.075% sodium bicarbonate (Corning), and 0.05mM β-mercaptoethanol (Sigma). PEL cells were reactivated with 1 mM NaB (Sigma) and 25 ng/mL TPA (Sigma) where indicated. Vero cells were maintained in DMEM media supplemented with 10% FBS, 1% penicillin and streptomycin, and 1% L-glutamine.
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9

Isolation of Primary Neuronal Cells

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Embryonic brains were dissected from 14.5 days post coitum (dpc) and placed in Ca2+ and Mg2+-free Hank's Balanced Salt Solution (HBSS) to remove the cerebellum and meninges. Isolated brains were transferred to trypsinization solution containing 0.05% trypsin/EDTA (Cellgro) and incubated for 30 min at 37°C with vigorous shaking at 250 rpm. Trypsinization was quenched by adding an equal volume of cell culture medium (DMEM supplemented with 10% fetal bovine serum (FBS), 20 mM L-glutamine, and 1% antibiotics/antimycotics (Cellgro)). After centrifugation at 1,000 rpm for 5 min, the tissue was triturated in neuronal cell culture medium (Neurobasal® medium supplemented with B-27® supplement (Invitrogen), 1× GlutaMax, 0.5 mM L-glutamine, and 1% antibiotics/antimycotics (Cellgro)) by gentle pipetting through a 1000 μl pipette tip. Triturated tissues were strained through a 40 μm nylon mesh. Resulting cells were plated on a tissue culture dish coated with poly-D-lysine (MW 30,000–70,000, Sigma-Aldrich) and laminin (Invitrogen) at 1 × 104 to 1.5 × 105 cells/cm2 depending on the experiment, and then cultured in the same medium. One-half of the medium was changed every three days.
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Cell Culture Protocols for Diverse Cell Lines

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VERO cells, HeLa cells, CHO cells, and human foreskin fibroblasts (HFF) were purchased from the American Type Culture Collection. All cells were maintained at 37°C in a 5% CO2 atmosphere and grown in either Alpha MEM (with Earle’s salts without ribonucleosides, deoxyribonucleosides, and glutamine) or DMEM (with 4.5 g/l glucose and sodium pyruvate without l-glutamine; Corning Cellgro). Unless otherwise stated, media was supplemented with 10% (vol/vol) FBS, 2 mM l-glutamine (Corning Cellgro), and 100 U/ml penicillin plus 100 mg/ml streptomycin (Quality Biological). HeLa cells were transiently transfected using 2 µg plasmid DNA and the Amaxa Nucleofector solution R according to the manufacturer’s instructions using program I-013 (Lonza) or with 0.25 µg plasmid DNA and JetPrime reagent according to the manufacturer’s instructions (Polyplus-transfection SA). To engineer a stable cell line expressing GFP-Rab11A, the GFP-Rab11A plasmid was linearized with ApaL1 and transfected into VERO cells using 2 µg of linearized plasmid, the Amaxa Nucleofector solution R, and program V-01, according to the manufacturer’s instructions. Stable clones were selected with 800 µg/ml G418 sulfate (Corning Cellgro) in Alpha MEM with 20 mM Hepes and cloned in serial dilutions in 96-well plates.
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