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27 protocols using anti vinculin

1

Protein Extraction and Western Blot Analysis

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Proteins were isolated with a lysis buffer composed of 50 mM Tris-HCl (pH 8), 150 mM NaCl, 1% Triton X-100, 0.1% SDS and the Halt Protease and Phosphatase Inhibitor Cocktail (Thermo Fisher Scientific, Waltman, MA, USA). The BCA protein assay kit (Thermo Fisher Scientific) was used to quantify the protein content. An equal amount of protein from each sample was separated on CriterionTM Precast Gel Tris-HCl (Biorad, Hercules, CA, USA) and transferred to polyvinylidene fluoride membranes (Millipore Corporation, Billerica, MA, USA), as previously described55 (link). The membranes were blocked for 2 hours in 5% non-fat dry milk PBS with 0.1% Tween 20 (Sigma-Aldrich) at room temperature and incubated overnight at 4 °C with primary antibody. After washing, the membranes were incubated for 1 hour at room temperature with horseradish-peroxidase-conjugated secondary antibody. The following primary antibodies were performed: anti- Collagen IV (1:1000, Abcam), anti-Fibronectin (1:1000, Abcam), anti-Vitronectin (1:1000, Abcam), anti-CASP3 (1:1 000, Cell Signaling Technology), anti-CASP9 (1:500, Cell Signaling Technology), anti-BAX (1:1000 Cell Signaling Technology), anti-RHO (1:1000 Merck Millipore), anti-Vinculin (1:1000 Thermo Fisher Scientific). Vinculin was used as the loading control.
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2

Protein Expression Analysis in Cancer Cell Lines

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A375, A375-GFP-PMCA4b, A375-GFP-PMCA4b-LA, MCF-7, MCF-7-GFP-4b, and MCF-7-Sh-PMCA4b cells were cultured in a 6-well plate for 48 h. The total protein content of the cells was precipitated with 6% TCA. Samples were separated by using 10% or 15% acrylamide gels, as appropriate, and electroblotted onto PVDF membranes (Biorad, Hercules, CA, USA), as described previously [28 (link)].
Blots were immunostained with the following rabbit monoclonal primary antibodies: antivinculin (1:100, ThermoFisher scientific, cat. # 700062), anti-P-cofilin (Ser3) (1:1000, Cell Signaling Technology, Danvers, MA, USA, cat. # 77G2), rabbit polyclonal antibody: anti-β-tubulin (1:1000, Abcam, cat. # ab6046), anti-PMCA1 (1:1000, Affinity BioReagents, cat. # PA1-914), mouse monoclonal antibodies: anti-PMCA4 (JA9, 1:1000, Sigma-Aldrich, cat. # P1494), anti-NA+/K+ ATPase (1:2000, Enzo Life Sciences, cat. # BML-SA247), and chicken polyclonal antibody: anti-GFP (1:5000, Aves, GFP-1020). Horseradish peroxidase-conjugated anti-rabbit, anti-mouse, or anti-chicken secondary antibodies were used for detection (Jackson ImmunoResearch, dilution 1: 10,000) and were visualized with Pierce ECL Western Blotting Substrate (Thermo Scientific). The ImageJ software was used for densitometry analysis.
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3

Western Blot Analysis of Caki-2 Proteins

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Caki-2 proteins were isolated by direct lysis with M-PER lysis buffer (Life Technologies). The protein content was quantified using the BCA protein assay kit (Thermo Fisher Scientific). An equal amount of protein from each sample was separated on Bolt™ 10% Bis-Tris Plus Gels (Life Technologies) and transferred to polyvinylidene fluoride membranes through Trans-Blot® Turbo™ blotting system (Bio-Rad). The membranes were blocked for one and a half h in 5% non-fat dry milk (Bio-Rad) diluted in PBS with 0.1% Tween 20 (Sigma-Aldrich) at room temperature and incubated with primary antibody overnight at 4 °C. After washing, the membranes were incubated for 1 h at room temperature with horseradish peroxidase-conjugated secondary antibody. The following primary antibodies were used: anti-IKB-α (1:1000) (Cell Signalling Technology), anti-Vinculin (1:1000) (Thermo Fisher Scientific).
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4

Protein Extraction and Western Blotting Protocol

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Whole cells extracts were prepared in lysis buffer (50 mM Tris-HCl pH 7.9, 400 mM NaCl, and 0.5% NP40) supplemented with protease inhibitor cocktail (Roche), resolved on 4–20% SDS-PAGE gels (BioRad), and transferred to 0.45 µm PVDF membranes (Millipore). The membranes were blocked in TBST with 5% non-fat milk, probed with primary antibodies, and detected with horseradish-peroxidase-conjugated anti-rabbit (Jackson ImmunoResearch Laboratories, #211-032-171) or anti-mouse (Cell Signaling Technologies, #7076) antibodies. Anti-rabbit secondary antibody was used at a 1:10,000 dilution and an anti-mouse secondary antibody was used at a 1:5000 dilution. Primary antibodies used: rabbit monoclonal HA-tag (Cell Signaling Technology, #3724) at a 1:1000 dilution, rabbit polyclonal anti-IDH1 (Cell Signaling Technology, #3997) at a 1:500 dilution, and mouse monoclonal anti-vinculin (Sigma, V9131) at a 1:1000 dilution. The order of antibody probing was as follows: anti-IDH1, then anti-HA, then anti-vinculin, and, between each probing, the membrane was stripped with Restore PLUS Western Blot Stripping Buffer (Thermo Scientific) and re-blocked with 5% non-fat milk. Uncropped western blots are shown in Supplementary Fig. 1.
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5

Protein Expression Analysis in PDX Samples

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Samples containing 40mg of protein from lysates of harvested PDX were separated by SDS-PAGE on 10% Tris-HCl gels and subsequently transferred to nitrocellulose filters. After blocking (Odyssey Blocking buffer; LI-COR Biosciences (Lincoln, NE)) the blots were incubated with the following primary antibodies: rabbit monoclonal anti-phospho-Akt (1:1000, #4060, Cell Signalling), mouse monoclonal anti- phospho- Erk1/2 (1:1000, #4374, Cell Signalling), mouse monoclonal anti-phosphotyrosine (1:1000, 05-321X, EMD Milipore (Darmstadt, Germany) and rabbit polyclonal anti-Vinculin (1:2, 500, PA5-19842, Thermo Scientific). Subsequently the filters were washed with phosphate-buffered saline (PBS) containing 0.1% Tween and then incubated with Alexa Fluor secondary antibodies (1:5, 000; Invitrogen). Specific proteins were detected using Odyssey IR imaging system (LI-COR Biosciences).
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6

Antibody Immunolabeling Protocol

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The following antibodies were purchased from Sigma-Aldrich (St. Louis, MO): anti-phospho-vinculin (pTyr822) polyclonal rabbit antibodies (catalog #V4889–1VL), anti-talin monoclonal mouse antibodies (clone 8d4, catalog #T3287), and anti-laminin-5 (γ2 chain) monoclonal mouse antibodies (clone D4B5, catalog # MAB19562). Anti-Type IV collagen monoclonal mouse antibodies (catalog #MA1–22148), anti-vinculin (pTyr1065) phosphospecific unconjugated polyclonal rabbit antibodies (catalog #44–1078G), anti-phospho-paxillin (pTyr118) polyclonal rabbit antibodies (catalog #2541S), and Alexa Fluor 488 goat anti-rabbit IgG (H + L) (catalog #A11008) were obtained from Thermo Fisher Scientific (Cambridge, MA).
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7

Protein Extraction and Western Blot Analysis

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Total proteins were extracted by RIPA buffer supplemented with SIGMAFAST™ Protease Inhibitors and Phosphatase Inhibitor Cocktails 3 and 2 (Sigma), boiled with Laemmli SDS sample buffer (VWR Int.) for 5 min, separated on 4–20% Mini‐PROTEAN®TGX™ Precast Gel and transferred onto a PVDF membrane using a semi‐dry transfer system (Bio‐Rad). Membranes were blocked with LI‐COR Blocking Buffer (LI‐COR Biosciences) and incubated with the following primary antibodies at the indicated dilutions: Anti‐VE‐cadherin (CellSignaling, 2500; 1:1000), anti‐mitofilin (Invitrogen, AB‐2547893; 1:500), anti‐vinculin (ThermoFisher, VLN01; 1:1000), anti‐tumour susceptibility gene‐101 (TSG101; Abcam, ab125011; 1:1000), anti‐synthenin‐I (Abcam, ab133257; 1:1000), anti‐GRP94 (Abcam, ab238126; 1:1000), anti‐claudin‐5 (Abcam, ab15106; 1:500), anti‐GAPDH (Abcam, ab181602; 1:1000). Actin polymerization was assessed using Biochem Kit (Cytoskeleton).
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8

Immunoblotting and Immunofluorescence Analysis of B Cells and Macrophages

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For Western blotting analysis, primary B cells, macrophages, or B cell lines were lysed in RIPA lysis buffer (MilliporeSigma, R0278) containing protease inhibitors (Thermo Fisher Scientific, A32963) and phosphatase inhibitors (Thermo Fisher Scientific, A32957). Antibodies used for blotting were from Cell Signaling Technology including anti-phospho-473-Akt (catalog 4060); anti-Akt (catalog 2920); anti-phospho-p44/42 MAPK (ERK1/2) Thr202/204 (catalog 9101); and anti-p44/42 MAPK (ERK1/2) (catalog 4695). Antibodies used for immunostaining included anti-Talin (MilliporeSigma, T3287), anti-Vinculin (Thermo Fisher Scientific, 700062), anti-HS-1 (Cell Signaling Technologies, 3890), and anti-ARPC1B (MilliporeSigma, HPA004832). Alexa-488 or -647 Phalloidin were from Thermo Fisher Scientific. siRNA for ARPC1B was from Horizon Inspired Cell Solutions (catalog L-012082-00-0005). Lipopolysaccharide was from MilliporeSigma (catalog L6511). FITC-gelatin was from Thermo Fisher Scientific (catalog G13187). Fluo-8 AM was from Abcam (catalog ab142773). SYK inhibitors BAY 61-3606 (Selleck) or R406 (AdooQ Bioscience) were used at 500 nM.
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9

Antibody Analysis of Autophagy Regulators

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The following antibodies were used in this study: anti-LC3 (#3868, Cell Signaling Technology), anti-YKT6 (sc-365732, Santa Cruz Biotechnology), anti-vinculin (700062, Thermo Fisher Scientific), anti-p62 (H00008878-M01, Abnova), anti-SNAP29 (ab181151, Abcam), anti-NDP52 (ab68588, Abcam), anti-OPTN (HPA003360, Sigma Aldrich), anti-TOM20 (sc-17764, Santa Cruz Biotechnology), anti-HaloTag (G9211, Promega), anti-ULK1 (#8054, Cell Signaling Technology), anti-FIP200 (#12436, Cell Signaling Technology). All antibodies were used at a 1:1000 dilution for western blotting and 1:200 for fluorescence microscopy. Uncropped images of western blots are shown in Fig. S5.
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10

Western Blot Analysis of Signaling Proteins

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Cells were treated according to the previously described western blot procedure [58 (link)]. The following primary antibodies were used: anti-IQGAP1 (1:400), anti-HER2 (1:800) (Invitrogen, Thermo Fisher Scientific); anti-actin (1:1000) (Sigma-Aldrich); anti-HER4 (1:1000) (Abcam, Cambridge, UK); anti-vinculin (1:1000) (Thermo Fisher Scientific); anti-p27 (1:1000) (BD Biosciences, Milan, Italy); anti-HER3 (1:1000), anti-PTEN (1:1000), anti-mTOR (1:600), anti-MAPK (1:1000), anti-AKT (1:1000), anti-phospho-AKT (Ser473) (1:1000) and anti-phospho-HER2 (Tyr1221/1222) (1:1000) (Cell Signaling Technology). Precision Plus Protein™ WesternC™ Standards were used as molecular weight standards (Bio-Rad #161-0376). Quantity One Software (Bio-Rad) was used for analysis.
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