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69 protocols using cd45 apc

1

Comprehensive Liver Macrophage Analysis

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Liver leukocytes were incubated with Fc-blocker (BD Biosciences, Franklin Lakes, NJ, USA) to prevent non-specific binding and labeled with APC-CD45 (Thermo Fisher, Waltham, MA USA) and PerCP-eFluor710-Ly-6G (Thermo Fisher). To exclude non-immune cells and neutrophils, CD45+Ly6G mononuclear cells (MNCs) were gated. FITC-F4/80 and PE-CD11b (Thermo Fisher) were used to define each macrophage population. For the analysis of PE-Ly6c, PE-CD36 Ab (Thermo Fisher), and PE-MerTK (R&D Systems, Minneapolis, MN, USA), PerCP-Cy5.5-CD11b was selected to identify each cell population. The cells with the highest expression of CD11b in addition to high FS and SS were defined as neutrophils and were excluded from the analysis. In the case of CLEC4F (C-type lectin domain family 4 F) staining, cells with or without permeabilization of cell membranes were labeled with a polyclonal goat anti-mouse CLEC4F antibody (R&D Systems) and an FITC-donkey polyclonal anti-goat IgG antibody (R&D Systems). PE-F4/80 (Thermo Fisher) was used for macrophage detection. Similarly, after permeabilization of the cell membrane (BD Biosciences), intracellular TNF-α was labeled with FITC-anti-TNF (Thermo Fisher). The cells labeled with fluorescent antibodies were analyzed using a Novocyte flow cytometer (Agilent, Santa Clara, CA, USA).
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2

Rat Hematopoietic Stem Cell Profiling

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Bone marrow or peripheral blood mononuclear cells were stained with the following fluorescence-conjugated antibodies used to differentiate rat hematopoietic stem and progenitor cell populations (26 (link)): APC-CD45 (17–0461-82, Thermo Fisher Scientific), PE/Cy7-CD71 (204424, Biolegend), BV510-CD90 (202535, Biolegend), FITC-Ox82 (205103, Biolegend).
Samples were acquired live on MACSQuant 10 Analyzer Flow Cytometer (Miltenyi) with 7-AAD used to exclude dead cells. Data was analyzed using FlowJo software version 10.0 (BD Life Sciences).
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3

Multiparametric Flow Cytometry of Lung and Spleen Immune Cells

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2x106 lung or spleen cells were resuspended in PBS and stained with Fixable Viability Dye eFluor 450 (eBiosciences) for 20 minutes, then washed and resuspended in PBS containing 1% heat-inactivated FBS, 1 mM EDTA, 10 μg/mL CD16/32 and 0.1% sodium azide. Cells were stained for 30 minutes with appropriate antibodies, fixed in BD Stabilizing Fix, and stored at 4°C until analysis on an LSR II (Becton Dickenson). Antibodies used to identify monocytes, macrophages, neutrophils, and DCs were as follows: neutrophils (CD11c-CD11b+SiglecFloLy6G+), monocytes (CD11c-CD11b+MHCII-CD64+), CD103+ cDCs (MHCII+CD11c+CD11b-CD24+CD103+), CD11b+ cDCs (MHCII+CD11c+CD11b+CD103-), and pDCs (CD11c+/-CD11b-CD103-B220+). APC-CD45, PE-Cy7-B220, and APC.780-MHCII (eBioscience), Alexa700-CD11c and PE-Cy7-SiglecF (Miltenyi Biotec), BV510-CD103, BV510-Ly6G, BV605-CD11b and PE-CD24 (Becton Dickenson), and BV711-CD64 and BV421-CD19 (BioLegend). The antibodies used to identify T cells and NK cells were as follows: APC-CD4, PerCp-Cy5.5-CD8, PE-Cy7-CD69, and PE-CD69 (Becton Dickenson) and PerCp-Cy5.5-NK1.1, FITC-CD3ε, and APC-gamma delta T cell receptor (γδ TCR) (eBiosciences). Flow cytometry data was analyzed using FlowJo version 7.6.5.
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4

Quantifying Circulating Endothelial Progenitor Cells

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About 0.2 ml blood was harvested from mice treated with or without diabetic mice-derived exosome (DMexo). The samples were kept in heparin-pretreated tube and labeled with APC-CD45, FITC-CD34, and PE-VEGFR2 (eBioscience, USA) antibodies. Circulating endothelial progenitor cells (EPCs) were defined as CD45-CD34+VEGFR2+ cells. Flowjo (Trees Tar, USA) was used to measure the percentage of EPCs and plot the Figures.
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5

Tumor and Immune Cell Isolation Protocol

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Harvested tumors were minced into fragments and digested with 80 U/mL collagenase (Invitrogen) in PBS containing 2% FBS for 1 hour at 37°C, and passed through a 70 μm cell strainer (BD). Spleens and lymph nodes were gently dissociated between the rough surfaces of two glass slides. Peripheral blood was obtained by retro orbital bleed. Ascites was completely drained from the peritoneum with a syringe. After red blood cell lysis (Sigma-Aldrich), single-cell suspensions were filtered and incubated for 30 minutes on ice with the following: APC-CD45, e450-CD11b, PerCP-Cy5.5-Gr-1, PE-Cy7-F4/80, a700-MHCII, PE-CD4, e450-CD8, and FITC-CCR2 (eBioscience, 1:500). Intracellular staining was performed for PE-Cy7-IFNγ and PE-IL12. Samples were run on the BD LSR-II flow cytometer (BD). Data were analyzed with FlowJo software (TreeStar).
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6

Delineate Innate Lymphoid and Macrophage Subsets

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Stained cells underwent analysis utilizing FACS Canto II, and the resultant data were processed utilizing FlowJo version 10 software (Ashland, OR, USA). The following antibodies procured from eBioscience (Thermo Fisher Scientific, Waltham, MA, USA) were employed for the delineation of innate lymphoid cells: Biotin-CD3e (100304; clone: 145-2C11; 1/200), Biotin-CD45R/B220 (103204; clone: RA3–6B2; 1/200), Biotin-Gr-1 (108404; clone: RB6-8C5; 1/200), Biotin-CD11c (117304; clone: N418; 1/200), Biotin-CD11b (101204; clone: M1/70; 1/200), Biotin-Ter119 (116204; clone: TER-119; 1/200), Biotin-FceRIa (134304; clone: MAR-1; 1/200), FITC-Streptavidin (405202; 1/500), PE-Cy7-CD127 (135014; clone: A7R34; 1/100), Pacific Blue-CD45 (103116; clone: 30-F11; 1/100), PE-GATA-3 (clone: TWAJ; 1/50), APC-RORγ (clone: AFKJS-9; 1/50), and Fixable Viability Dye eFluor 780 (1/400) [20 (link),21 (link)]. Additionally, the following antibodies (eBioscience, San Diego, CA, USA) were utilized for the discrimination of M1 and M2 macrophages: APC-CD45.2 (17045482; clone: 104; 1/50), PE-F4/80 (12480182; clone: BM8; 1/50), APC-Cy7-CD11b (47011282; clone: M1/70; 1/50), FITC-CD206 (MA516870; clone: MR5D3; 1/50), and PE-Cy7-CD11c (25011482; clone: N418; 1/50) [22 (link)].
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7

Multimodal Immune Cell Analysis

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Peripheral blood, bone marrow samples and spleen samples were collected from recipient mice at the same time point for each group. The cells were re-suspended in Ammonium Chloride Solution (07850, STEMCELL Technologies) to deplete red cell, washed with PBS, re-suspended in FACS buffer and stained with APC-CD45.2 (17-0454-82, eBioscience) at 4°C for 30min. After staining, the cells were washed with FACS buffer and subjected to flow cytometry analysis.
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8

Isolation and FACS-Sorting of Intestinal Epithelial Cells

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ECs were isolated as previously described (Haber et al., 2017 (link)), with modifications. Briefly, the ileal, cecal, and colonic tissues of VB12- and PBS-gavaged mice were dissected and washed with cold PBS. The tissues were opened longitudinally and cut into small fragments (2–3 cm in length), followed by incubation with 30 mM EDTA-PBS on ice for 30 min, during which the tissues were shaken vigorously every 8–10 min. Isolated crypts were washed once with cold PBS and dissociated with TrypLE Express (Invitrogen) for 10 min at room temperature. The single-cell suspension was passed through a 70-μm cell strainer and used for FACS. To FACS-sort the cells, cell suspensions were labeled with a cocktail of fluorescent antibodies specific for APC-CD45 (catalog 17-0451-83; Invitrogen), FITC-CD31 (catalog 102406; BioLegend), PE/Cy7-TER-119 (catalog 116222; BioLegend), and PE-EpCAM (catalog 12-5791-83; Invitrogen). Dead cells were excluded using LIVE/DEAD Fixable Violet Dead Cell Stain (Invitrogen). CD45 CD31 TER-119 EpCAM+ ECs were sorted using a SONY SH800S Cell Sorter or a CytoFLEX SRT Cell Sorter.
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9

Isolation of Intestinal Epithelial Cells

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The ileum (similar length as colon moving proximal from the ileocecal junction), cecum and colon were dissected from mice after MCAO or sham surgery. After washing with cold PBS, the tissues were opened longitudinally and cut into small fragments (2–3 cm in length), followed by incubation with 30 mM EDTA-PBS on ice for 30 min, during which the tissues were shaken vigorously every 8–10 min. Isolated crypts were washed once with cold PBS and dissociated using TrypLE Express (Invitrogen) for 10 min at room temperature. Cell suspensions were passed through a 70-μm cell strainer and then labeled with a cocktail of fluorescent antibodies specific for APC-CD45 (Invitrogen, catalog 17-0451-83), FITC-CD31 (BioLegend, catalog 102406), PE/Cy7-TER-119 (BioLegend, catalog 116222), and PE-EpCAM (Invitrogen, catalog 12-5791-83). Dead cells were excluded using LIVE/DEAD Fixable Violet Dead Cell Stain (Invitrogen). CD45 CD31 TER-119- EpCAM+ ECs were sorted using a SONY SH800S Cell Sorter.
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10

Multiparameter Immune Cell Analysis

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FITC-DX5, PerCPCy5.5-NK1.1, PE-IFN-γ, APC-CD3, eF450-CD3, eF450-Lin, PE-CD49a, FITC-TCRβ, PE-CD27, PECy7-CD11b, eF780-CD45.2, eF450-CD45.1, FITC-Granzyme-B, APC-Ly49H, FITC-LY49H, PE-TCRβ, APC-CD45.1, eF450-Ki-67, PerCPeF710-CD27, PECy7-NK1.1, eF450-CD11b, AF700-CD3, PECy7-Sca-1, AF700-CD117, AF750-CD127, APC-CD135, FITC-CD244, PE-CD122 were purchased from eBioscience and BioLegend (San Diego, CA).
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