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7 protocols using alexa fluor 594 conjugated anti rabbit igg

1

Multiplex Immunofluorescence Profiling of Lymph Nodes

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Fresh LNs were embedded in tissue-freezing medium. Cryostat sections (8 μm thick) were cut for imaging by fluorescence confocal microscopy. The following primary Abs were used for tissue staining: anti-HEV MECA79 (sc-19602, SCBT), anti-Lyve-1 (ab14917, Abcam), anti-PDPN (AF3244, R&D Systems), anti-ER-TR7 (sc-73355, SCBT), anti-CD11b (101202, BioLegend), anti-PDGFRβ (136005, Biolegend), anti-NG2 (ab129051, Abcam), anti-RANKL (510002 Biolegend), anti-CD35 (NBP2-52667, Novus Biologicals), anti-MAdCAM (16-5997-85,eBioscience), anti-ZO-1 (61-7300, Invitrogen), anti-Collagen I (ab34710, Abcam), anti-Fibronectin (ab45688, Abcam), anti-LepR (L9536, Sigma-Aldrich). The following secondary Abs were used: Alexa Fluor 488-conjugated anti-rabbit IgG, Alexa Fluor 594-conjugated anti-rabbit IgG, Alexa Fluor 488-conjugated anti-rat IgG, Alexa Fluor 594-conjugated anti-rat IgG, Alexa Fluor 488-conjugated anti-goat IgG, and Alexa Fluor 594-conjugated anti-goat IgG (Jackson ImmunoResearch). The stained tissue sections were imaged using EVOS FL Auto 2 Imaging System (Thermo Fisher Scientific). For the quantification of images, all images were automatically processed using ImageJ (NIH) and split into RGB channels. Auto threshold was used to convert intensity values of the immunofluorescent stain into numeric data. DAPI (VECTASHIELD, Vector Laboratories) was used to stain the cell nuclei.
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2

Retinal Ganglion Cell Immunolabeling

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Freshly isolated eyes were immersion fixed in 4% paraformaldehyde for 30 min then cryoprotected in 30% sucrose with 0.02% sodium azide. Retinas were dissected out and vitreous removed. Immunolabeling included washes in 0.1 M PBS, then incubation in blocking solution (5% donkey serum, 1% Triton X-100 in 0.1 M PBS) for 1 h, primary antibody (diluted in 0.5% bovine serum albumin, 0.9% NaCl, 1% Triton X-100 in 0.1 M PBS) for 48–72 h, washes in 0.1 M PBS, blocking solution for 30 min, secondary antibody incubation for 18 h, washes, DAPI labeling, then coverslipping with Fluoromount-G. RBPMS (RNA binding protein, multiple splicing) primary antibody (Genetex, Irvine, CA) to label RGCs (1:250) and secondary antibody from Jackson ImmunoResearch (West Grove, PA) Alexa Fluor 594-conjugated anti-rabbit IgG (1:250) were used. Images were collected on a Leica DMi8 confocal microscope integrated with Leica application Suite X 3.1.1.15751 (Leica Microsystems, Buffalo Grove, IL, USA). Figures were created using Adobe Illustrator, Adobe Creative Cloud version 2017.
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3

Immunofluorescence Antibody Conjugates

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Horseradish peroxidase (HRP)-conjugated anti-mouse IgG (number A4416) and HRP-conjugated anti-rabbit IgG (number A0545) were purchased from MilliporeSigma; HRP-conjugated anti-rat IgG (number 112-035-003), fluorescein isothiocyanate (FITC)- and rhodamine-conjugated anti-mouse IgG (number 715-095-151 and number 715-295-151), Alexa Fluor 594-conjugated anti-rabbit IgG (number 711-585-152), and Alexa Fluor 488-conjugated anti-rat (number 712-545-153) were purchased from Jackson Immuno Research Inc. (West Grove, PA).
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4

Immunofluorescence of Influenza A Virus

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Immunofluorescence of IAV-infected cells was performed on PR8 infected cells at MOI10 after 4 hours of infection. Cells were washed with PBS twice and then blocked with 10% donkey serum and 3% BSA in PBS for 20 minutes at 4°C. Blocked cells were then washed with PBS twice, stained with AlexaFluor488 conjugated Cholera Toxin B subunit (Molecular Probes Cat No C34775, 1:400) in 1% donkey serum and 0.3% BSA in PBS for 30 minutes at 4°C. Cells were then washed, fixed using 3.7% formaldehyde for 25 minutes, and then permeabilized in 0.3% Triton X-100 in PBS for 15 minutes. Fixed and permeabilized cells were blocked with 10% donkey serum and 3% BSA in 0.2% Tween 20 in PBS for 20 minutes at room temperature. Blocked cells were probed using NP (EMD Millipore Cat No MAB8257, 1:400) in 1% donkey serum and 0.3% BSA in 0.2% Tween 20 in PBS overnight at 4°C, and labeled AlexaFluor594 conjugated anti-rabbit IgG (Jackson ImmunoResearch Cat No 711-585-152, 1:500) in 1% donkey serum and 0.3% BSA in 0.2% Tween 20 in PBS for 2 hours at room temperature. Slides were mounted using Prolong Diamond Antifade mountant with DAPI (ThermoFisher Cat No P36962). Images were acquired using Nikon Eclipse Ti confocal microscope and processed using Nikon Elements 4.30.01 software.
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5

SARS-CoV-2 Spike Protein Visualization

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Expression of spike protein of SARS-CoV-2 was measured by immunofluorescence microscopy. A549-ACE2 cells seeded on glass slides were infected with SARS-CoV-2 at a MOI of 0.1. 24hr post infection (24hpi), cells were fixed by 4% paraformaldehyde in phosphate buffered saline (PBS) for 1hr at room temperature. The coverslips were washed with 0.1% BSA in 1xPBS (Wash buffer) and blocked with 1% BSA with 0.3% Triton-X100 in PBST (Blocking buffer) for 45min at room temperature. Cells were incubated with 1:500 anti-SARS-CoV-2 Spike glycoprotein antibody (Abcam, Catalog#ab272504) diluted in blocking buffer for overnight at 4 degree. Subsequently, after washes, cells were incubated with 1:500 Alexa Fluor 594-conjugated-anti-rabbit-IgG (Jackson Immunoresearch, Catalog#111-585-144) diluted in blocking buffer for 1hr at room temperature, followed by incubation with 4,6-diamidino-2-phenylindole (Invitrogen, Catalog#D1306) for 5 minutes at room temperature. Coverslips were mounted in antifade mounting medium (Thermo scientific, Catalog#TA-030-FM) and the fluorescence images were recorded using a Leica confocal microscope.
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6

Immunofluorescence Staining Protocol

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Immunofluorescence was conducted as described. The slices were incubated at 4 °C overnight with mouse anti-OV-6 antibody (1:150; Roche, Basel, Switzerland) and rabbit anti-PKM2 antibody (1:50; CST) or rabbit anti-p-STAT3 antibody (1:100; CST), followed by fluorescent staining with FITC-conjugated anti-mouse IgG and Alexa Fluor 594-conjugated anti-rabbit IgG (Jackson, PA, United States). DAPI was used to stain the nuclei in the tissue samples. Images were captured with an Axio Imager 2.
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7

Immunolabeling Retinal Ganglion Cells

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Freshly isolated eyes were immersion fixed in 4% paraformaldehyde for 30 min then cryoprotected in 30% sucrose with 0.02% sodium azide. Retinas were dissected out and vitreous removed. Immunolabeling included washes in 0.1 M PBS, then incubation in blocking solution (5% donkey serum, 1% Triton X-100 in 0.1 M PBS) for 1 h, primary antibody (diluted in 0.5% bovine serum albumin, 0.9% NaCl, 1% Triton X-100 in 0.1 M PBS) for 48–72 h, washes in 0.1 M PBS, blocking solution for 30 min, secondary antibody incubation for 18 h, washes, DAPI labeling, then coverslipping with Fluoromount-G. RBPMS (RNA binding protein, multiple splicing) primary antibody (Genetex, Irvine, CA) to label RGCs (1:250) and secondary antibody from Jackson ImmunoResearch (West Grove, PA) Alexa Fluor 594-conjugated anti-rabbit IgG (1:250) were used. Images were collected on a Leica DMi8 confocal microscope integrated with Leica application Suite X 3.1.1.15751 (Leica Microsystems, Buffalo Grove, IL, USA). Figures were created using Adobe Illustrator, Adobe Creative Cloud version 2017.
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