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Mitoprofile

Manufactured by Abcam

Mitoprofile is a lab equipment product designed to measure various parameters related to mitochondrial function. It provides comprehensive analysis of mitochondrial activity, including respiration, membrane potential, and metabolic state. The core function of Mitoprofile is to enable researchers to assess mitochondrial health and dynamics in a variety of biological samples.

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5 protocols using mitoprofile

1

Analyzing Hepatic Lipid Metabolism Proteins

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Liver homogenates from 16-week HFD or acute insulin injected Cpt2 lox/lox and Cpt2L−/− mice were prepared using 1x RIPA buffer with protease and phosphatase inhibitors. The protein concentration was measured using the Pierce BCA Protein Assay kit (Thermo Scientific). We used 30μg of protein on an SDS-PAGE and then transferred it to a nitrocellulose (Protran BA 83, Whatman) membrane. We then blocked with 3% BSA-TBST (Tris-buffered saline with Tween20). The membranes were probed with antibodies Pcx (Cell Signaling), Acly (Cell Signaling), Total Acc (Cell Signaling), Fasn (BD Biosciences), Scd1 (Cell Signaling), Hsp27 (Cell Signaling), Mitoprofile (Abcam) and Hsc70 (Santa Cruz Biotechnology) diluted 1:1000 with 3% BSA in TBST. Hsc70 used the appropriate Cy3 fluorescent secondary antibody, and the other primary antibodies used corresponding secondary antibodies conjugated to horseradish peroxidase. Images were collected using an Alpha Innotech FluorChemQ and presented with minimal image processing.
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2

Cybrids and OXPHOS Biochemical Assays

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Fibroblast cells were grown in DMEM medium supplemented with glutamax (446 mg/l), 10% fetal calf serum, 50μg/ml uridine and 1mM sodium pyruvate under standard conditions. Cells were fused with 143B rhoo cells as previously described [63 (link)]. Several clones were isolated and the resulting cybrid cells were subsequently expanded. Biochemical assays were performed on isolated mitochondria and/or permeabilized cells. Western blot analysis of a patient’s muscle biopsy sample and Blue Native gel analysis (BNG) of a patient’s fibroblast were performed as previously described [63 (link)]. We used “MitoProfile” antibody mix (Total OXPHOS human WB antibody cocktail, Abcam) for muscle lysates. For fibroblast lysates we used antibody GRIM19 (Abcam), which corresponds to the mitochondrial complex I subunit NDUFA13.
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3

Immunodetection of Respiratory Complexes in Oral Mucosa

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For the immunodetection of respiratory complexes, 20 µg of total protein samples from oral mucosa were fractionated in 12% polyacrylamide gel with running buffer: twenty-five millimolar Tris, 190 mM glycine, 0.1% SDS, pH 8.3 was transferred onto a polyvinyl difluoride (PVDF) membrane using a wet transfer tank with the transfer buffer: twenty-five millimolar Tris, 190 mM glycine, 20% methanol, pH 8.3. The PVDF membrane was blocked for 1 h with 3% bovine serum albumin (BSA) in Tris-buffered saline with Tween 20 (TBST) buffer; 20 mM Tris pH 7.5, 150 mM NaCl, 0.1% Tween 20, at room temperature. Then, the PVDF membrane was incubated overnight at 4 °C with MitoProfile® Total Oxidative Phosphorylation (OXPHOS) Human Western Blot (WB) Antibody Cocktail (ab110411 Abcam) used at 1/200 dilution in 1% BSA in TBST. The blot was rinsed three times for 5 min with TBST buffer. Primary antibodies were detected with the secondary antibodies: Horseradish peroxidase (HRP)-conjugated anti-mouse Immunoglobulin G (IgG) used at 1/300 in 1% BSA in TBST for 1 h at room temperature and the Chemiluminescent Western Blot Detection (ThermoFisher Scientific).
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4

Mitochondrial Protein Quantification

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Protein was extracted using cold RIPA buffer (50 mM Tris-HCl, pH 7.4, 1% NP-40, 0.5% Na-deoxycholate, 0.1% SDS, 150 mM NaCl, 2 mM EDTA, 50 mM NaF) supplemented with protease inhibitor cocktail (Roche, 11873580001) and quantified using BCA Protein Assay Kit (Thermo Fisher Scientific 23225). Fifty micrograms of protein was separated on a 12% SDS-PAGE gel and electrotransferred to Immobilon-P membranes (Millipore, IPVH00010). Primary antibodies used were Mitoprofile (Abcam ab110411; 1:1000), CS (Abcam ab96600; 1:10000) and GAPDH (Abcam ab8245; 1:6000). Appropriate secondary antibodies coupled to horseradish peroxidase were used, and peroxidase activity was tested using ECL (GE Healthcare, RPN2209). Quantification of WB was performed by densitometric analysis in Image J; values were normalized by total protein amount (GAPDH) and/or by mitochondrial mass (CS).
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5

Comprehensive Antibody Validation for Western Blot and Immunofluorescence

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We used the following antibodies for western blotting: P‐AKT (S473; ref. 4060), P‐S6 (S240/244; ref. 5364), S6 (ref. 2217), AKT (ref. 9272), GSK‐3β (ref. 9315), P‐GSK‐3β (S9; ref. 9322), P‐4E‐BP1 (Ser65; ref. 9451), P‐4E‐BP1 (Thr37/46; ref. 2855), 4E‐BP1 (ref. 9644), RAPTOR (ref. 2280), RICTOR (ref. 2114), mTOR (ref. 2983), P‐AMPK (T172; ref. 2531), P‐ULK1 (Ser757; ref. 6888), SDH (ref. 11998) from Cell Signalling, LC3 (ref. L7543) and p62 (ref. P0067) from Sigma, GAPDH (ref. 8245), Mitoprofile (ref. 110413) and TOM20 (ref. 56783) from Abcam, actin (ref. 56459), and GRP‐75 (ref. 13967) and Porin1 (ref. 390996) from Santa Cruz. For immunofluorescence, LAMP1 (ref. 1D4B), embryonic MyHC (ref. BF‐G6), and types I, IIa, and IIb MyHC (ref. BAD5, SC‐71, and BF‐F3, respectively) were from Developmental Studies Hybridoma Bank, mTOR was from Cell Signalling, distrophin (ref. 15277) from Abcam, NCAM (ref. 5032) was from Millipore, and α‐bungarotoxin Alexa Fluor 555‐conjugate (ref. B35451) was from Invitrogen.
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