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Rat anti cd31

Manufactured by BD
Sourced in United States, Denmark

Rat anti-CD31 is a laboratory reagent used in the identification and study of the CD31 protein, also known as PECAM-1 (Platelet Endothelial Cell Adhesion Molecule-1). CD31 is a cell surface glycoprotein expressed on endothelial cells, platelets, and certain immune cells. This antibody can be used in various immunological techniques to detect and analyze the expression of CD31 in biological samples.

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90 protocols using rat anti cd31

1

Immunofluorescence Staining of Cryosections

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Fresh tissue samples were embedded in Tissue-TEK OCT and cut into 7-μm-thick sections for IF staining. Cryosections were fixed and permeabilized in ice‐cold methanol for 10 minutes at −20°C. Following washings, sections were blocked in 10% ready‐to‐use normal goat serum or 10% donkey serum for 1 hour at room temperature, followed by overnight incubation with rat anti-CD31 (BD Biosciences) diluted in blocking buffer at 4°C. Slides were stained for 1 hour with anti-rat Alexa Fluor 568 antibody at room temperature. Cell nuclei were counterstained with 1:2,000 Hoechst 33342 (Sigma) and sections were mounted with DAKO mounting medium. After each staining step, samples were washed three times in TBS‐T for 5 minutes.
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2

Infection of Brain Endothelial Cells

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Primary brain endothelial cells of mice (8 weeks of age) were cultured in 24‐well plates as described previously (Ridder et al, 2011). Freshly purchased immortalized human brain endothelial cells (hCMEC/D3, free of mycoplasma, hepatitis A, B, C, HPV, herpes, and HIV 1 and 2; Millipore #SCC066) were grown in 24‐well plates coated with rat tail collagen, type I (1:20 in 1× PBS) in EndoGRO‐MV medium (Millipore # SCME004) supplemented with 1 ng/ml FGF2 (Millipore #GF003). Primary murine cells were infected with 1.0 × 1010 gp/well, three days after preparation. Immortalized human cells were infected with 1.6 × 1010 gp/well, one day after seeding. Medium was changed at least 3 days after infection. Ten days (murine cells) or 4 days (human cells) after infection, cells were fixed in 4% PFA and immunostained with chicken anti‐GFP (1:2,000, Abcam #ab13970), and DAPI (1:2,000). Murine cells were additionally stained with rat anti‐CD31, 1:500 (BD Pharmingen #557355). Infectivity was determined by the ratio of GFP‐positive cells to DAPI.
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3

Immunofluorescence Characterization of Stem Cells

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Immunofluorescence was performed as described.33 (link) The following primary antibodies and dilutions were used: rat anti-CD31 1 : 1000 (BD, Franklin Lakes, NJ, USA), mouse anti-Tuj-1 1 : 1000 (Covance, Princeton, NJ, USA), mouse anti-AFP 1 : 1000 (Inmunostep, Salamanca, Spain), rabbit anti-Nanog 1:1000 (Chemicon, Billerica, MA, USA), mouse anti-SSEA-1 (MC-480) 1 : 100 (Pierce, Waltham, MA, USA), rabbit anti-E-cadherin 1 : 60 (Cell Signaling, MA, USA), mouse anti-E-cadherin 1:200 (Cell Signaling, Danvers, MA, USA), rabbit anti-β-catenin 1 : 200 (BD). Secondary antibodies were: Alexa 647 goat anti-IgG rabbit (Molecular Probes, Eugene, OR, USA), Alexa 488 goat anti-IgG mouse (Molecular Probes), Alexa 568 donkey anti-IgG rat (Molecular Probes), Cy3 donkey anti-IgG rabbit (Jackson Immunoresearch, West Grove, PA, USA) and FITC donkey anti-IgG mouse (Jackson Immunoresearch). Images were obtained with NIKON EclipseTE2000 and ZEISS LSM 800 confocal microscope.
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4

Immunostaining of HUVECs and Tumor Cryosections

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HUVECs were grown on a cover slide until confluent and then fixed with 4% paraformaldehyde. Tumor cryosections or the fixed HUVECS were blocked and permeabilized in PBS containing 1% bovine serum albumin (BSA) and 0.3% TritonX-100, then immunostained with rat anti-CD31 (1:400, BD, USA) antibody at 4°C for overnight. After washing with PBS, sections were incubated with FITC-conjugated goat anti-rat secondary antibody(1:500, Abcam, USA) at room temperature for 2 hours, followed by Hoechst staining. Images were captured with a fluorescence microscope.
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5

Visualizing Cell-Cell Interactions with Confocal Microscopy

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Images were acquired using an Olympus FLUOVIEW FV1000 confocal microscope. Fluorescence intensity was measured using ImageJ or Olympus FLUOVIEW software. The Pearson’s coefficient for co-localization was measured using Olympus FLUOVIEW software. Commercially available antibodies used for immunoblotting and immunostaining of tissue sections include rabbit anti-MFSD2a (Cell Signaling Technology, Beverly, MA), mouse anti-E-cadherin (cat#610181, BD, Biosciences, San Diego, CA, USA), rabbit anti-NG2 (Millipore), rabbit anti-GFAP (cat#Z0334, DAKO, Glostrup, Denmark), chicken anti-Nestin (cat#CH23001, Neuromics, Minneapolis, MN, USA), rat anti-CD31 (cat#553370, BD Biosciences, San Diego, CA, USA), rat anti-CD34 (GTX28158, GeneTex, Irvine, CA, USA), mouse-anti-Erk1/2 (cat#9107 S, Cell Signaling Technology), and rabbit-anti-pErk1/2 (cat#4370 s, Cell Signaling Technology). Secondary antibodies include anti-rabbit IgG Alexa Fluor-594/488, 1:500 (cat#711-585-152/cat#711-545-152, Jackson labs), anti-rat IgG Alexa Fluor-594, 1:500 (cat#112-585-167, Jackson labs), anti-mouse IgG Dylight-405, 1:500 (Jackson labs), and anti-rabbit IgG DyLight-405,1:500 (cat#711-475-152, Jackson labs). Secondary antibodies used for immunoblotting were IRDye 800CW anti-rabbit, 1:10,000 (LICOR) and IRDye 680RD anti-mouse, 1:10,000 (LICOR).
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6

Multimodal Tissue Characterization

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Tissues were snap-frozen, embedded in OCT, and sectioned at 10 μm thickness. For histology, tissue sections were stained with hematoxylin and eosin. For immunostaining, tissue sections were post-fixed with 4% PFA for 10 mins and blocked with 2% BSA for 1 hour. The following primary antibodies were used: chicken anti-KRT14 (1:1000, gift from Dr. Xing Dai, UC Irvine), rabbit anti-LEF1(1:200, Cell Signaling), goat anti-PDGFRa (1:350, R&D), rat anti-CD31 (1:200, BD Bioscience), rat anti-CD45 (1:200, BD Bioscience), rabbit anti-Ki67 (1:1000, Cell Signaling), rabbit anti-PLIN (1:1000, Cell Signaling), rabbit anti-phospho-SMAD2 (1:250, Cell Signaling). DAPI was used for nuclei counterstaining. Tissue sections were visualized with an Olympus FV3000 confocal laser scanning microscope.
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7

Immunofluorescence Analysis of Mouse Eye Tissues

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At 6 h and 1 day post-CNV induction, enucleated mouse eyes were fixed in 4% paraformaldehyde for 1 h at room temperature, cryoprotected in 30% sucrose at 4°C overnight, and embedded in OCT compound. Eyes were cryosectioned to 15 μm thickness. For immunofluorescence, sections were blocked in a blocking buffer (0.5% Triton, 0.2% BSA, and 5% donkey serum in PBS) for 1 h at room temperature and subsequently incubated with primary antibodies overnight at 4°C. After washing, samples were incubated with secondary antibodies for 1 h at room temperature. Goat anti-Iba1 antibody (1:250; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan, 011-27991), rabbit anti-TMEM119 (1:500, Synaptic Systems, Göttingen, Germany, 400 002), rat anti-CD31 (1:100, BD Biosciences, NJ, USA, 553370), and rabbit anti-MMP-9 antibody (1:100; Abcam, Cambridge, MA, USA, ab38898) were used for primary antibodies, and Alexa Fluor 488-conjugated donkey anti-goat antibody (1:500; Thermo Fisher Scientific, Waltham, MA, USA, A11055), Alexa Fluor 594-conjugated donkey anti-rabbit antibody (1:500; Thermo Fisher Scientific, A21207), and Alexa Fluor 647-conjugated donkey anti-rat antibody (1:500; Jackson Immuno Research Laboratories, INC., PA, USA, 712-605-15) were used for secondary antibodies.
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8

Choroid Plexus Immunostaining Protocol

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The choroid plexus was explanted 48 h post adoptive cell transfer from the fourth ventricle and transferred on glass object slides and incubated in PBS (PAN Biotech) + tween20 (0.3%; Sigma) at RT for 5 min, washed twice in PBS (PAN Biotech) for 5 min and fixed in PBS (PAN Biotech) + PFA (2,2%; Sigma), glucose (2%, Sigma), sodium acide (0.02%; Sigma) for 20 min at RT. Choroid plexus were then rinsed in PBS (PAN Biotech), fixed in methanol (100%, Sigma) for 6 min at RT, washed twice in PBS for 5 min and blocked in PBS (PAN Biotech) + BSA (1%; PAN Biotech), tween20 (0.3%; Sigma), normal goat serum (10%; Sigma) for 30 min at RT. The staining was performed in PBS (PAN Biotech) + tween20 (0.3%; Sigma) + primary antibody for 2h at RT (rat anti CD31; 1:100; BD). After washing the tissue twice in PBS (PAN Biotech) for 5 min, secondary stainings were performed using anti rat secondary antibodies (donkey anti rat-Alexa647; life technologies). Finally, the tissue was stained with DAPI (1 µg/ml; Sigma) and embedded in fluorescent mounting media (Dako).
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9

Retinal Vascular Network Quantification

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Retinal flat mounts were prepared as described above, before overnight incubation with rat anti-CD31 (#553370, 1:100; BD Biosciences) primary antibody. Retinas were then washed, incubated with appropriate secondary antibodies, and mounted on slides for microscopic analysis. Images of the superficial vasculature were captured on a Nikon A1R confocal microscope equipped with a 10× objective (numerical aperture, 0.3; pinhole, 1.2 Airy units) and stitched to obtain views of the full flat-mounted retinas. CD31-positive superficial vascular area was then quantified using AngioTool software.17 (link) Images of the intermediate and deep vascular layers were captured using a 20× objective (numerical aperture, 0.75; pinhole, 1.2 Airy units).
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10

Cellular and Molecular Profiling

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For immunofluorescence staining, primary [rat anti-CD31 (BD Bioscience, #550300), rabbit anti-ki67 (Bethyl Laboratories, #IHC-00375), rabbit anti-desmin (Abcam, #Ab15200-1)] and secondary [anti-rat Alexa488, anti-rabbit Alexa546 (Life Technologies)] were used. Nuclei were stained with Hoechst (Sigma).
For Western blot analyses, primary [pERK (Cell Signaling, #4370), ERK (Santa Cruz, #sc-94), (pP38 (Cell Signaling, #9215), p38 (Cell Signaling, #9228), and β-actin (Santa Cruz, #sc-1616-R)] and secondary [horseradish peroxidase-conjugated antibodies (Dako)] were used. Proteins were detected with ECL (Pierce) and viewed using Amersham imager 600 (GE).
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