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Dulbecco s phosphate buffered saline

Manufactured by Lonza
Sourced in Switzerland, United States, Belgium, United Kingdom

Dulbecco's phosphate-buffered saline is a balanced salt solution commonly used in cell culture and laboratory procedures. It maintains the physiological pH and osmolarity of cells and tissues. The solution contains sodium chloride, potassium chloride, sodium phosphate, and potassium phosphate.

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27 protocols using dulbecco s phosphate buffered saline

1

Generating Neural Stem Cell Spheroids

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The cells utilised were healthy human neural stem cells (hNSC) H9-derived (a commercial neural stem cell cell-line from Gibco, obtained from a healthy female donor, #N7800100) and human sporadic ALS iPS-derived neural stem cells (a commercial neural stem cell cell-line from iXCells Biotechnologies obtained from a 55 years old Caucasian female sporadic ALS donor without any known mutations in SOD1 or C9ORF72, #40HU-007). Both healthy and ALS hNSC were seeded onto Matrigel-coated surfaces prepared by making 1:30 dilution of Matrigel® hESC-Qualified Matrix (Corning, #354277) into Knockout™ DMEM/F-12 medium, also known as Dulbecco's Modified Eagle Medium/Nutrient Mixture F-12 (Gibco, #12660012) incubated for 1 h at room temperature. Cells were maintained with hNSC proliferation medium changing it every day after. Once the desired number of cells was reached, at TP0, cells were washed with sterile DPBS, also known as Dulbecco’s Phosphate Buffered Saline (Lonza, #17-512F), detached with TrypLE™ express enzyme (Gibco, #12604021), counted with a haemocytometer and transferred in the desired density to ultra-low attachment PrimeSurface® 3D culture spheroid plates (S-Bio, #MS-9096MZ) to form neurospheroids.
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2

Autologous APOSEC Production Protocol

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Blood obtained from each study volunteer at the Austrian Red Cross Blood Transfusion Service of Upper Austria was used to produce autologous APOSEC according to current GMP guidelines. PBMCs were separated from whole blood samples of the participants by density centrifugation using LSM 1077 (Lymphocyte Separation Medium, Lonza, Switzerland). Removal of LSM was achieved by two washing steps using Dulbecco’s phosphate-buffered saline (Lonza, Switzerland). PBMCs were resuspended in phenol red–free CellGro GMP DC medium (CellGenix, Freiburg, Germany) containing no xenogeneic proteins. A sample was drawn for complete blood count to adjust white blood cells to a concentration of 25 × 106 cells/ml. Irradiation with 60 Gy induced apoptosis of PBMCs. By cultivation of apoptotic PBMCs in CellGro GMP DC medium, release of the secretome was achieved. After incubation for 24 h ± 2 h, cells were removed by centrifugation. The supernatant containing the secretome was sterile filtered at a pore size of 0.22 μm. The adequate production of APOSEC was defined by appropriate secretion of the following important cytokines: interleukin (IL)-8 (0–5214 pg/ml), epidermal growth factor (EGF; 25–226 pg/ml), and transforming growth factor-β (TGF-β; 2575–21732 pg/ml).
Lyophilized culture medium not containing any cells (CellGro, CellGenix, Freiburg, Germany) served as placebo.
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3

Quantitative PCR analysis of myoblast transcripts

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Following 24 h of treatment, myoblasts were harvested using Dulbecco’s Phosphate-Buffered Saline (Lonza, Nottingham, UK) and stored at −80 °C. RNA of treated cells was isolated using EZ-RNA isolation kit (Biological Industries, Beit Haemek, Israel) and cDNA was synthesised using iScript cDNA synthesis kit (Bio-Rad, Watford, UK). Real-time qPCR analyses were performed on a StepOnePlus™ real-time PCR system (Applied Biosystems, Warrington, UK) using QuantiNova SYBR Green PCR Kit (QIAGEN, Manchester, UK); 10 ng of cDNA per reaction was used in a total volume of 10 μL PCR reaction mixture. Three amplifications, consisted of an initial denaturation cycle at 95 °C for 2 min, followed by 40 cycles of 20 s at 95 °C (denaturation), 20 s at optimal annealing temperature, and 20 s at 72 °C (extension), were performed for each primer, followed by a melt curve analysis. Threshold cycle for each target gene of interest was normalised to the housekeeping gene 18S (annealing temperature, 55.7 °C), which has been extensively used in muscle [18 (link),19 (link),20 (link)], and analysed using the delta-delta (2−ΔΔCt) method [21 (link)]. The sequences and annealing temperature of all mitochondrial- and ER stress pathway-associated primers used are provided in Table 1 and Table 2, respectively.
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4

Transient Transfection of U2OS Cells

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Experiments were conducted using transiently transfected U2OS cell (ATCC, Manassas, VA) maintained in DMEM with 10% fetal bovine serum (Hycolone Laboratories, Logan, UT). Cells were subcultured into 24-well glass bottom plates (In Vitro Scientific, Sunnyvale, CA) before transfection. Transfection was performed 12–24 h prior to measurement using GenJet (SignaGen Laboratories, Rockville, MD) according to the manufacturer’s instructions. The growth medium was replaced with Dulbecco’s phosphate-buffered saline containing calcium and magnesium (Biowhittaker, Walkerville, MD) immediately before measuring. The DNA constructs used in this manuscript have been previously described [9 (link)].
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5

Cellular Bioenergetics and Viability Assay

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Dimethyl sulfoxide (DMSO), Dulbecco’s phosphate-buffered saline (DPBS), Dulbecco’s Modified Eagle Medium (DMEM), tissue culture grade water, trypsin, and Hanks balanced salt solution (HBSS) were obtained from Lonza (Walkersville, MD, USA). Fluorescent probes, 5,5′, 6,6′-tetrachloro-1,1′, 3,3-tetraethylbenzimidazolyl-carbocyanine iodide (JC-1), and propidium iodide (PI) were obtained from Sigma-Aldrich (St Louis, MO, USA). Fetal Bovine Serum (FBS) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Annexin V and fluorescein conjugate (FITC annexin V) was purchased from Invitrogen (Carlsbad, CA, USA). The oxiselect ™ intracellular ROS Assay Kit (Green Fluorescence) was purchased from Cell Biolabs (San Diego, CA, USA). The XF Cell Mito Stress Kit was purchased from Agilent technologies (Santa Clara, CA, USA).
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6

Cardiomyoblast Culture and Oxidative Stress Analysis

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H9c2 rat derived cardiomyoblasts (ECACC No. 8809294) were purchased from the European Collection of Cell Cultures (Salisbury, Wiltshire, UK), while ASP was synthesized according to Han et al. [51 (link)] and obtained from High Force Research (ca. 98%, batch SZI-356-54) (Durham, UK). Hematoxylin, eosin, xylene, and formalin were obtained from Merck-Millipore (Billerica, MA, USA), halothane was from Safeline Pharmaceuticals (Johannesburg, South Africa), Dulbecco’s Modified Eagle’s Medium, Dulbecco’s phosphate-buffered saline, penicillin, and streptomycin from Lonza (Verviers, Belgium), and fetal bovine serum and horse serum from Biochrom (Berlin, Germany). High Capacity Reverse Transcription Kit, RNAse free water, siNrf2 (cat #AM16708), scrRNA (cat #AM4615), TRIzol reagent, Turbo DNase Kit, Lipofectamine RNAimax reagent, and all Taqman gene expression assays were supplied by ThermoFisher Scientific, Inc. (Waltham, MA, USA). Rat Oxidative Stress and Atherosclerosis RT2 Profiler PCR Arrays (PARN-065ZA and PARN-065ZA, respectively), RT2 SYBR Green qPCR Master Mix, RT2 Array First Strand Kit and RNeasy Mini Kit were obtained from Qiagen (Valencia, CA, USA). All other consumables and reagents were purchased from Sigma-Aldrich Corp. (St. Louis, MO, USA), unless otherwise specified.
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7

Isolation of Human Peripheral Blood Mononuclear Cells

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Up to 10 mL of freshly collected whole blood in EDTA was diluted to 35 mL with DPBS (Dulbecco’s phosphate buffered saline, Lonza BioWhittaker, Walkersville, MD, USA) and layered carefully onto 15 mL of Ficoll (Ficoll-Paque PLUS, 1.077 ± 0.001 g/mL, GE Healthcare, Uppsala, Sweden) in 50-mL tubes, without disrupting the Ficoll border. Separation of the PBMC buffy coat was achieved via centrifugation at 1800 rpm for 20 min at room temperature. The buffy coat containing peripheral blood mononuclear cells (PBMCs) was extracted to another 50-mL tube via transfer pipette. The separated PBMCs were washed twice with DPBS by centrifugation at 1500 rpm for 7 min at 4 °C, then once in 10 mL of cold (4 °C) magnet activated cell sorting method (MACS) buffer (DPBS pH 7.2, 2 mM EDTA (Amresco, Sydney, Australia), 0.5% FBS (Fetal Bovine Serum, SAFC Biosciences, Lenexa, KS, USA) via centrifugation at 1200 rpm for 10 min at 4 °C. The supernatant was aspirated retaining the PBMC pellet.
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8

Quantifying Tumor-Associated Cell Populations

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Sphere culture cells from both UA samples and tumor core biopsies were used for fluorescence-activated cell sorting (FACS) analysis between passages P4-P9. Spheres were processed into single cells, washed with FACS buffer, PBS (Dulbecco’s Phosphate Buffered Saline, Lonza, BioWhittaker) containing 4% FBS and stained for 1 h at 4 °C. For intracellular staining, cells were first fixed and permeabilized using a BD Cytofix/Cytoperm™ Kit, and then incubated overnight with primary antibodies, after washing, cells were incubated with matched secondary antibodies for 2 h. Directly conjugated or primary and secondary antibodies are shown in supplementary information (Table S8). Cells were then washed and analyzed by a LSRFortessa™ cell analyzer (BD Bioscience). At least 10,000 events were counted. The Fluorescence Minus One Control (FMOs) and secondary antibody staining (without primary antibody) were used as negative controls to set the gate for each marker. FlowJo software was used for data analysis.
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9

Quantification of Mitochondrial and ER Stress Genes

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Following 24 hours of treatment, myoblasts were harvested using Dulbecco's Phosphate-Buffered Saline (Lonza, Nottingham, UK) and stored at -80°C. RNA of treated cells was isolated using EZ-RNA isolation kit (Biological Industries Beit Haemek, Israel) and cDNA was synthesised using iScript cDNA synthesis kit (Bio-Rad, UK). Real-time qPCR analyses were performed on a StepOnePlus™ Real-Time PCR System (Applied Biosystems) using QuantiNova SYBR Green PCR Kit (QIAGEN); 10 ng of cDNA per reaction was used in a total volume of 10 μl PCR reaction mixture. Three amplifications, consisted of an initial denaturation cycle at 95°C for 2 minutes, followed by 40 cycles of 20 seconds at 95°C (denaturation), 20 seconds at optimal annealing temperature, and 20 seconds at 72°C (extension), were performed for each primer, followed by a melt curve analysis. Threshold cycle for each target gene of interest was normalised to the housekeeping gene 18S (annealing temperature, 55.7°C), and analysed using the delta-delta (2 -ΔΔCt ) method [19] .
The sequences and annealing temperature of all mitochondrial-and ER stress pathwayassociated primers used are provided in Supplementary Table 1 and 2, respectively.
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10

IgG Reactivity and ELISA Quantification

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IgG reactivity against FV2BIC, FV2CHO, FV6BIC, and PvDBP was measured in duplicate by an ELISA as described previously (18 (link), 28 (link), 54 (link)). Briefly, 96-well flat-bottom microtiter plates (Nunc MaxiSorp) were coated with recombinant protein in Dulbecco's phosphate-buffered saline (Lonza). After blocking and washing, human plasma samples (1:400), human and mouse monoclonal antibodies (0.08 to 10 μg/ml), or rabbit serum (1:20 to 1:2,560) was added, followed by horseradish peroxidase-conjugated rabbit anti-human IgG (1:3,000; Dako), goat anti-mouse IgG (1:1,000; ThermoFisher), or goat anti-rabbit IgG (1:3,000; Dako). Bound antibodies were detected by adding tetramethylbenzidine (TMB PLUS2; Eco-Tek), and the reaction was stopped by the addition of 0.2 M H2SO4 to the mixture. The optical density (OD) was read at 450 nm, and the specific antibody levels were calculated in arbitrary units (AU), as described previously (18 (link)). Negative cutoff values were calculated as the mean AU values plus 2 standard deviations (SD) obtained with the Danish control samples (set 6) (Table 1).
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