The largest database of trusted experimental protocols

Cobas ampliprep cobas taqman hcv test

Manufactured by Roche
Sourced in United States, Germany, Japan

The COBAS AmpliPrep/COBAS TaqMan HCV Test is a diagnostic laboratory equipment product designed for the detection and quantification of Hepatitis C Virus (HCV) RNA in human serum or plasma samples. It utilizes real-time PCR technology to provide automated sample preparation and amplification, delivering reliable and accurate results.

Automatically generated - may contain errors

53 protocols using cobas ampliprep cobas taqman hcv test

1

HCV RNA Quantification and Genotyping Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
In UHID, HCV RNA was quantified by using COBAS Am-pliPrep/COBAS TaqMan HCV test (Roche Diagnostic Systems, Branchburg, USA) in the period 2008-2009 and by using Abbott RealTime HCV test (Abbott Molecular Inc., Des Plaines, IL, USA) in the period 2010-2015.
HCV RNA quantification in CITM was performed by using COBAS AmpliPrep/COBAS TaqMan HCV test (Roche Molecular Systems Inc., Branchburg, NJ, USA).
In UHC, COBAS Amplicor Hepatitis C Virus Test, version 2.0 (Roche Diagnostics) was used for qualitative detection of HCV RNA while COBAS TaqMan HCV test version 2.0 (Roche Molecular Systems Inc., USA) was used for HCV RNA quantification.
Determination of HCV genotypes and subtypes in UHID and CITM was performed by using a standardised reverse hybridisation assay Versant HCV genotype 2.0 Assay (LiPA, Siemens Healthcare Diagnostics, Tarrytown, USA) that allows determination of both HCV genotypes and subtypes. At the UHC testing site, HCV genotyping was performed by using LINEAR ARRAY Hepatitis C Virus genotyping test (Roche Molecular Systems Inc., USA) that detects HCV genotypes only (subtyping was not possible).
+ Open protocol
+ Expand
2

HCV RNA Viral Load Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
HCV RNA viral load was determined with the Cobas AmpliPrep/Cobas TaqMan HCV test (Roche Diagnostics, Milan, Italy) (quantification range of 15 to 100 million IU/mL).
+ Open protocol
+ Expand
3

HCV Diagnosis and Staging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-HCV was measured using a chemiluminescent enzyme immunoassay kit (Lumipulse II HCV; Fujirebio). HCV RNA in the serum was analyzed by using the standardized automated quantitative PCR (COBAS AMPLICOR HCV MONITOR v2.0 Test; COBAS® AmpliPrep/COBAS® Taq-Man® HCV Test; Roche Molecular Diagnostics) as reported previously (24 (link),25 (link)). Similarly, HCV genotype was determined by PCR as reported previously (26 (link)).
Ultrasonographic examinations were performed on all patients in order to investigate the shape of the liver and to identify the lesions in the organ. Computed tomography were performed on all patients. Liver biopsies were performed on patients without bleeding tendencies (i.e., those who did not present with low platelet counts). Other potential predictors of the progression of LC, including serum Alb, T. Bil, PT and Plt were also used. The fibrosis-4 (FIB-4) index, a biomarker that has been demonstrated to be effective in assessing liver fibrosis and LC, was calculated using the following formula: Age (years) x AST (U/l)/[Plt (109/l) x ALT (U/l)1/2] (27 (link)). An FIB-4 index ≥2.67 indicated the presence of liver fibrosis (28 (link)).
+ Open protocol
+ Expand
4

Monitoring Adverse Events and Efficacy in HCV Treatment

Check if the same lab product or an alternative is used in the 5 most similar protocols
The patients were carefully monitored for clinical symptoms and adverse events (AEs) including serious adverse events (SAEs) during the treatment and follow-up. Laboratory data including routine blood tests, biochemical liver and renal function and HCV RNA were regularly monitored at baseline, week 4 of therapy, the end of therapy (week 12 or week 24), and at week 12 after the completion of therapy. Additional laboratory tests might be performed in some patients with the request of patient and the consultation of referring physician. Efficacy was measured by sustained virologic response at post-treatment week 12 (SVR12). Serum HCV RNA was quantified by reverse-transcription polymerase chain reaction (RT-PCR) using the Cobas AmpliPrep/COBAS TaqMan HCV Test (Roche Diagnostics, Branchburg, NJ, USA), which has a lower limit of 15 IU/mL for HCV RNA quantification. HCV genotype was determined using RT-PCR with genotype-specific primers from the 5′noncoding region of the virus. Routine blood tests and biochemical liver and renal functions were determined using standard procedures. The primary endpoint was SVR12, which was defined as serum HCV RNA undetectable at 12 weeks after the end of therapy. The secondary endpoints were the treatment-related AEs and laboratory abnormalities.
+ Open protocol
+ Expand
5

Cytokine and Growth Factor Dynamics in CHC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cytokine and growth factor concentrations in patients with CHC were determined at four different time points. The first time point represented serum samples obtained from patients with CHC before antiviral treatment. Serum samples from the same patients were also collected after four, eight and 12 weeks of treatment (second, third and fourth time point). The samples were stored at −80 °C to avoid repeated freeze and thaw cycles. Quantification of HCV RNA was performed with COBAS AmpliPrep/COBAS TaqMan HCV Test (Roche Diagnostics, Manheim, Germany) as recommended by the manufacturer.
+ Open protocol
+ Expand
6

HCV Viral Nucleic Acid Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Viral nucleic acid extraction and quantification were performed using the COBAS® AmpliPrep/COBAS® TaqMan® HCV Test (Roche Molecular Diagnostics, Almere, Netherlands), according to manufacturer’s instructions.
+ Open protocol
+ Expand
7

Quantifying HCV RNA Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
The specimens were acquired from ACTG, and each specimen was provided with a Roche COBAS Ampliprep/COBAS Taqman HCV Test v2.0 viral load value. A 200 μl specimen was tested with the HCV Quant Assay, and RNA was quantified by standard curve using the GT1b (American Red Cross 024GJ66260) sample as a reference, in 1E6 to 1E2 IU/ml dilutions (equation: y = −3.5805x + 40.154). Samples were also quantified by the Abbott RealTime HCV Assay (Abbott Molecular Inc., Des Plaines, IL) on the m2000 following manufacturer’s recommendations. Two hundred μl of each specimen was diluted 1:4 to bring the volume up to the required 800 μl for the m2000sp. The instrument volume input was 500 μl with 300 μl as dead volume resulting in 125 μl of specimen used in the test.
+ Open protocol
+ Expand
8

Liver Biopsy Protocol for CHC and Non-CHC Patients

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver biopsies from CHC and non-CHC patients were obtained in the outpatient clinic of the Division of Gastroenterology and Hepatology, University Hospital Basel. Parts of the biopsy material that were not needed for routine histopathology were used for research purposes after obtaining written informed consent. The use of biopsy material for this project was approved by the Ethikkommission Nordwest- und Zentralschweiz, Basel, Switzerland, protocol number M989/99. Grading and staging of CHC was defined according to the METAVIR classification. Serum HCV RNA was quantified using the COBAS AmpliPrep/COBAS TaqMan HCV Test and the COBAS Amplicor Monitor from Roche. Response to treatment in CHC patients was defined as described previously (Dill et al., 2011 (link)). Diagnosis of non-CHC patients was based on clinical, laboratory, and histopathological assessment according to routine clinical practice. CHC and non-CHC patients’ characteristics are summarized in Tables S2 and S3, respectively.
+ Open protocol
+ Expand
9

Quantifying Viral Loads with Cobas TaqMan

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ID-NAT yield donations were tested further with the discriminatory COBAS AmpliPrep/COBAS TaqMan HBV test, COBAS AmpliPrep/COBAS TaqMan HCV test, and COBAS AmpliPrep/COBAS TaqMan HIV test (Roche Molecular Systems) on a Cobas TaqMan analyzer (Roche Diagnostics Company, Shanghai, China). The manufacturer states that the lower limit of detection for the HBV DNA assay is 20 IU/mL. Hepatitis B virus DNA of follow-up samples was tested for viral load by the same method.
+ Open protocol
+ Expand
10

Sustained Virologic Response in CHC Patients

Check if the same lab product or an alternative is used in the 5 most similar protocols
Patients with CHC who received a complete course of DAA therapy from September 2012 to December 2017 were enrolled in this retrospective analysis. Inclusion criteria were as follows: age ≥ 18 years, presence of the serum anti-hepatitis C virus (HCV) antibody for > 6 months and detectable HCV RNA (detection limit = 15 IU/mL; COBAS Ampliprep/COBAS TaqMan HCV test, Roche Diagnostics, Branchburg, NJ, USA), and completion of DAA therapy. Exclusion criteria were as follows: presence of liver disease caused by other etiologies, decompensated liver disease, hepatocellular carcinoma at baseline, comorbid diseases or cancer, and concurrent use of eltrombopag or immunomodulatory agents. Demographic data, complete blood count analysis results, and biochemical data were collected at baseline, week 2, week 4, EOT, and PW12. Paired LSMs were performed using acoustic radiation force impulse elastography (ARFI) at baseline and PW12 in a subgroup of patients (n = 199). This study was conducted in accordance with the 1975 Declaration of Helsinki. All patients provided written informed consent prior to enrollment, and this study was approved by the Research Ethics Committee of China Medical University Hospital, Taichung, Taiwan (CMUH106-REC2–105).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!