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Pierce radioimmunoprecipitation assay buffer

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Pierce radioimmunoprecipitation assay buffer is a buffer solution used in the process of radioimmunoprecipitation, which is a technique used to isolate and study specific proteins from cell or tissue samples. The buffer is designed to facilitate the binding of antibodies to their target proteins and the subsequent precipitation of the protein-antibody complexes.

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9 protocols using pierce radioimmunoprecipitation assay buffer

1

Quantifying EV-Bound Myelin Antibodies

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We determined the EV concentration with a bicinchoninic acid protein assay kit (Thermo Scientific, USA), following the protocol provided by the manufacturer. We disrupted the EV membrane using a Pierce radio-immunoprecipitation assay buffer (Thermo Scientific, USA). Anti-myelin basic protein (MBP), anti-MOG antibodies and anti-albumin (as negative control) were detected and quantified by sandwich enzyme-linked immunosorbent assay (ELISA) (Abbexa, UK). In short, EV contents were added to a 96-well plate coated with human MOG, MBP or albumin (Sigma-Merck Millipore, Germany). After washing, EVs were added to the plate and incubated for 60 min at 37°C. Thereafter, a working solution of detection reagent A was added to the plate and incubated for 60 min at 37°C. The wells were washed 5 times, and substrate solution was added to each well and incubated for 15 min at 37°C, in the dark. By addition of acid, the enzyme reaction was stopped and the plate was measured at 450 nm. IgG levels were calculated using a standard curve. The detection range of the ELISA kits was 3.12-200 ng/mL; the minimum detectable dose of IgG is typically less than 1.21 ng/mL. The team at IdiPAZ analyzed all antibody measurements blindly, and all assays were conducted in duplicate.
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2

Western Blot Analysis of Protein Expression

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Pierce Radio-Immuno Precipitation Assay Buffer (Thermo Fisher Scientific, MA, USA) was used to prepare total proteins. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis was performed to separate whole-cell proteins into equal amounts, which were then electro-transferred to nitrocellulose membranes. Non-specific antigen sites were blocked with 10% bovine serum albumin in 1× Tris-buffered saline for 1 h. Western blotting was performed using the above-described specific primary antibodies. Immunoreactive bands in immunoblots were visualized with horseradish peroxidase-coupled goat anti-rabbit immunoglobulin by an ECL Plus (GE Healthcare Life Sciences, Pittsburgh, PA, USA), which is an enhanced chemiluminescence Western blotting system. All experiments were repeated at least three times and yielded similar results on each occasion.
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3

Western Blot Protein Analysis Protocol

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Protein lysates were extracted from cells using the Pierce radio immunoprecipitation assay buffer (Thermo Fisher) with 1% protease inhibitor. Protein lysates were quantified using the bicinchoninic acid method (Biorad). Quantified protein lysates were diluted in protein loading buffer (Biorad) and denatured at 95°C for 10 min. The protein samples were then resolved on sodium dodecyl sulfate–
polyacrylamide gel electrophoresis, transferred onto a polyvinylidene difluoride membrane (Millipore), and then blocked with 5% BSA in Tris‐buffered saline‐Tween 20 (TBS‐T; Sigma) for 1 h at room temperature. The blocked membrane was incubated with primary antibodies in 5% BSA in TBS‐T at 4°C overnight. All antibodies used for western blotting are listed in Table S1. After washing with TBS‐T, the membrane was incubated for 1 h with horseradish peroxidase‐conjugated secondary antibody (1:3000; Sigma). A complex of primary and secondary antibody‐labeled proteins was detected by an enhanced chemiluminescence system (Biorad) followed by manual exposure using the Hypercassette Autoradiography Cassette (Cytiva Amersham).
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4

Western Blot Analysis of Cellular Proteins

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siRNA-transfected cells were extracted and centrifuged. Cell pellets were lysed in Pierce radioimmunoprecipitation assay buffer (89900, Thermo Fisher Scientific) with Protease Inhibitor Cocktail Tablets (11836170001, Roche) and PhosSTOP Phosphatase Inhibitor Cocktail Tablets (04906845001, Roche). The protein concentration in each sample was measured using the Pierce BCA Protein Assay Kit (23227, Thermo Fisher Scientific). Laemmli Sample Buffer (1610747, Bio-Rad) was used to dilute samples to 3.5 μg/μl. Thirty-five micrograms of total protein was added in each lane of 4 to 15%, 15-well gradient gels (4561086, Bio-Rad). The gels were run for 35 min and the proteins were transferred to nitrocellulose (Bio- Rad) at 100 V for 45 min. The membrane was blocked in 5% milk for 1 hour, incubated overnight in primary antibodies against Vimentin (ab92547, Abcam; 1:1000), Nesprin3 (ab74261, Abcam; 1:500), Lamin A/C (2032S, Cell Signaling Technology; 1:1000), NHE-1 (SC-136239, Santa Cruz Biotechnology; 1:1000), TRPV4(ab39260, Abcam; 1:1000), P38 (SC-535, Santa Cruz Biotechnology; 1:1000), and glyceraldehyde-3-phosphate dehydrogenase (ab181602, Abcam; 1:1000). Blots were incubated with secondary antibodies against the primary for 1 hour and imaged using a LI-COR Odyssey imaging system (LI-COR Biotechnology).
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5

Quantitative Analysis of Stress Receptors

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Blocks containing forebrain cortex, dorsal hippocampus and amygdala were dissected from brains using a mouse brain matrix (Zivic Instruments). Then, 1 mm slices were cut in Paxinos and Franklin's Mouse Brain Atlas24 coordinates bregma 1.10–0.10 and bregma −1.22 to 2.18 approximately. Blocks were homogenized in Pierce radioimmunoprecipitation assay buffer (Thermo Scientific), and protein concentrations were measured using Pierce bicinchoninic acid protein assay kit (Thermo Scientific), and adjusted to 0.8 μg/μl. An automated western assay was then performed, using 12–230 KDa separation module (Protein Simple), in a WES system (Protein Simple), following protocol from manufacturer, using antibodies for GR (no. 3660, 1:20; Cell Signaling Technology; RRID:AB_11179215), MR (monoclonal antibody kindly provided by Professor Gomez‐Sanchez,25 clone1D5, 1:10), and glyceraldehyde 3‐phosphate dehydrogenase (no. 5174, 1:20; Cell Signaling Technologies; RRID:AB_10622025). The image was analysed in Compass for Simple Western software (Protein Simple).
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6

Calcium and Magnesium-Induced ERK1/2 Phosphorylation

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The 5001 cell line stably expressing hCaSR was starved in serum-free DMEM medium supplemented with 0.2% (w/v) BSA overnight, followed by washing with Hanks’ balanced salt solution (HBSS) three times and a subsequent 10-min HBSS incubation in the morning of the second day. To induce ERK1/2 phosphorylation, varying concentrations of [Mg2+]o (0 to 50 mM) or [Ca2+]o (0 to 30 mM) with or without 0.5 mM TNCA were added to cells and incubated for 10 min at 37°C. The cells were then lysed with Pierce radioimmunoprecipitation assay buffer (Thermo Scientific). Total protein concentration was measured using the Bio-Rad assay. Lysates containing 100 μg of total protein were loaded onto 4 to 20% gradient SDS-PAGE gels for separation. After electrophoresis, proteins on the gel were transferred to nitrocellulose membranes and were further analyzed by Western blotting. Anti–phospho-p44/42 ERK (1:1000 dilution) and anti-p44/42 (1:2000) polyclonal antibodies were utilized as probes to detect the phospho-ERK1/2 and total ERK1/2, respectively. A chemiluminescent detection method (AP Conjugate Substrate Kit, Bio-Rad) was applied to detect phospho-ERK1/2 and total ERK1/2. The respective bands on Western blots were evaluated by densitometry. The EC50 of [Mg2+]o- or [Ca2+]o-dependent responses were obtained by fitting the [Mg2+]o or [Ca2+]o concentration-response curves with the Hill equation (Eq. 1).
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7

Western Blotting of Vitellogenin

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Western blot analysis against Vg was performed as previously reported [66 (link)]. Briefly, ovaries were dissected from WtSW and NlInR2E4 females at 3 and 5 days after eclosion, and then homogenized in Pierce radioimmunoprecipitation assay buffer (Thermo Fisher Scientific). For immunoblot staining, equal amounts of protein were separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis and then transferred to a polyvinylidene difluoride membrane (Millipore). The membrane was incubated with anti-Vg polyclonal rabbit antibody (1: 1000) for 1 h at room temperature (RT), followed by incubation with horseradish peroxidase conjugated goat anti-rabbit antibody (MBL life science) for 1 h at RT, The antibody against ß-actin was used as a loading control. The image of immunoreactivity was taken by the Molecular Imager ChemiDoc XRS+ system (Bio-Rad).
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8

Protein Expression Kinetics in Mouse Ovaries

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Ovaries harvested from CD-1 PD5 mice were flash-frozen with liquid nitrogen at 0, 4, 8, 13, 18, 24, and 30 hours after CPA injection (150 mg/kg). The whole ovaries were homogenized in Pierce radioimmunoprecipitation assay buffer (89900, Thermo Fisher Scientific) with protease inhibitor (11836153001, Roche Diagnostics GmbH) and phosphatase inhibitor cocktails (04906837001, Roche Diagnostics GmbH). Proteins were loaded into the 4 to 15% Mini-PROTEAN TGX Precast Protein Gels (#4561084, Bio-Rad Laboratories Inc.) and transferred to a nitrocellulose membrane using the Trans-Blot Turbo Transfer System (#1704150, Bio-Rad Laboratories Inc.). The blots were probed with primary antibodies, followed by secondary antibodies. The catalog numbers and dilution of primary antibodies were as follows: p63-α (D2K8X) (13109s; 1:1000) and α/β-tubulin (2148s; 1:2000) from Cell Signaling Technology and DDX4 (ab270534; 1:2000) from Abcam. Proteins were detected using the Clarity Western ECL Substrate (#1705061, Bio-Rad Laboratories Inc.) and exposed using the iBright CL1500 Imaging System (A44114, Invitrogen).
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9

Western Blot Analysis of LDLR

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Proteins were extracted using Pierce radioimmunoprecipitation assay buffer (Thermo Fisher Scientific) containing Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific), loaded on a 4%–20% Mini-PROTEAN® TGX™ Gel (Bio-Rad; CA, USA), and then electrophoretically separated and transferred onto polyvinylidene fluoride membranes (Atto-Tec, Tokyo, Japan) using the Trans-Blot Turbo Transfer System (Bio-Rad). The membranes were probed with primary antibodies against LDLR (1:2500; Abcam) and GAPDH (1:2000; Sigma-Aldrich) using an iBind™ Western System (Thermo Fisher Scientific).
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