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29 protocols using dgu 20a3r

1

Molecular Weight Characterization by GPC

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The molecular weights and molecular-weight distributions were determined using gel permeation chromatography (GPC; DGU 20A 3R, Shimadzu, Kyoto, Japan) employing a solvent delivery unit, refractive index detector, and Styragel column (high temperature 6E, 10 μm, Φ 7.8 × 6300 mm; high molecular weight (HMW) 7, 15–20 μm, Φ 7.8 × 300 mm; HMW 6E, 15–20 μm, Φ 7.8 × 300 mm). The GPC calibration curve was prepared using polybutadiene standard (Kit Poly(1,4-butadiene) number average molecular weight standards, WAT035709, Waters Corp., Eschborn, Germany).
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2

HPLC Quantification of Berberine and Derivatives

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Berberine, 3c and 6k (5 mg) were dissolved in 1 ml PBS (50 mM, pH 7.4) at 25 °C. The suspension was sonicated for 30 min and then centrifuged at 15000 g for 5 min. The supernatant was filtered through a PTFE filter (0.2 μm) slowly. Then 10 μL filtered solution was injected into the HPLC system (Shimadzu DGU-20A3R) on a Shimadzu-GL WondaSil C18-WR column and quantified using the standard curves made by the corresponding known concentrations of berberine, 3c and 6k. The eluent was methanol/water (65/35, v/v) at a flow rate of 1.0 ml/min with the detection wavelength at 254 nm.
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3

Quantification of Kuwanon G and Morusin in Morus alba L.

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The HPLC equipment used for the quantitative analysis of the two flavones, kuwanon G and morusin, in M. alba L. was a Shimadzu LC-20A series (Kyoto, Japan) consisting of a pump (LC-20AT), degassing unit (DGU-20A3R), column oven (CTO-20A), auto sampler (SIL-20A), and PDA detector (SPD-M20A). The acquisition and processing of chromatographic data was performed using the LabSolution software (Version 5.53, SP3, Shimadzu, Kyoto, Japan). The column used for the separation of kuwanon G and morusin was the Phenomenex Gemini C18 analytical column (250 mm × 4.6 mm, 5 μm, Torrance, CA, USA), which was maintained at 45 °C. The mobile phase for the efficient separation of analytes was composed of 0.1% (v/v) aqueous formic acid (A) and acetonitrile (B), and flowed from the initial 20% B to 90% B for 50 min. The flow rate was kept constant at 1.0 mL/min, the injection volume was 10 μL, and the PDA scanned for quantification was 190–400 nm. For HPLC analysis of the two biomarker compounds in M. alba L., 500.0 mg of the ground raw M. alba L. sample material was dissolved in 20 mL of 70% methanol and extracted for 60 min at 25°C using a Branson ultra-sonicator, 8510E-DTH (Danbury, CT, USA). Then, the extracted solution was filtered through a 0.2 μm membrane filter (Pall Life Sciences, MI, USA), before injection into the HPLC equipment.
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4

Octanol-Buffer Partition Coefficient of Berberine

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Berberine, 3c and 6k of 1 mg were dissolved in three centrifugal tubes (5 ml) containing phosphate buffer (pH 7.4)-saturated 1-octanol solution (2 mL), followed by the addition of 1-octanol saturated PBS (2 mL). Each tube was vigorously mixed for 1 min and then shaken for 6 h at a speed of 1000 rpm at 37 °C. The mixtures were then centrifuged. 1 mL of 1-octanol phase and 1 mL of buffer were separately collected. Each phase was diluted to a suitable concentration and analysed by HPLC (Shimadzu DGU-20A3R) on a Shimadzu-GL WondaSil C18-WR column (λ = 254 nm) with an eluent of methanol/water (65/35, v/v, 1.0 ml/min). The log D value for each compound was calculated from the ratio of the peak areas using the following equation: Log D = log (Areaoct × x/Areabuf × y). x, y is the dilution factor.
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5

Quantitative LC-MS/MS Analyte Profiling

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All LC-MS/MS analyses were conducted using a Shimadzu LC-20AD, DGU-20 A5R, SPD-20A, SIL-20AC, CBM-20A, CTO-20AC, and LCMS-8030 plus system. Nebulizer gas for MS/MS was provided using a N2 supplier model 24F SLP-07E-S53C (System Instruments, Tokyo, Japan). HPLC for separation was conducted on Shimadzu LC-6AD, DGU-20 A3R, SPD-20A, FCV-12AH, and FRC-10A instruments. The results were collected and analyzed using Shimadzu Labsolution software. Nebulizing gas was set at 2.0 L min−1; DL temperature was set at 250 °C; heat block temperature was set at 400 °C; drying gas flow was 15 L min−1; CID gas was set at 230 kPa; and ion gauge vacuum was stable at 1.72 × 10−3 Pa. Solvents or additives such as MeCN and FA were HPLC grade and purchased from commercial suppliers. Isodesmosine-13C3,15N1 was chemically synthesized in our previous research.10 (link) All columns for HPLC separation were purchased from commercial suppliers, including the symmetry C18 (250 mm × 4.6 mm, Waters, MA, USA), YMC-Pack ODS-AM (150 mm × 4.6 mm, YMC, Kyoto, Japan), and Supelco Discovery HS F5-3 (3 μm, 150 mm × 2.1 mm, Sigma Aldrich, St. Louis, MO, USA). A Supelguard guard cartridge (3 μm, 2.1 mm, Sigma Aldrich) was used alongside the Supelco Discovery HS F5-3 column. Terumo syringes (1 mL) (Terumo, Tokyo, Japan) and Millex LH filters (0.45 μL) (Merck Millipore, MO, USA) were also used.
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6

Comprehensive LCMS-based Analytical Platform

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Several Shimadzu LC units (Tokyo, Japan), including an online vacuum degasser (DGU-20A3R), three pumps (LC-20ADXR), an auto-sampler (SIL-20ACXR), a column oven (0–85 °C, CTO-20 A), two electronic 2-channel/6-port valves (FCV-12AH), and a controller (CBM-20 A), were used. An ABSciex 5500 Qtrap mass spectrometer (Foster City, CA, USA) equipped with a Turbo VTM electronic spray ionization (ESI) interface enabled quantitative measurements, while a Shimadzu IT-TOF-MS mounted ESI source was used for high-resolution mass spectrometry.
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7

Quantitative HPLC Analysis of Octreotide

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The octreotide concentration in released media was quantified by HPLC assay. A Shimadhu (Shimadzu Scientific Instruments, Columbia, MD, USA) HPLC system coupled with pumps having built-in system controller (LC-20AT), degasser (DGU-20A3R), DAD detector (SPD-20AV) and autosampler (SIL-20AHT) were employed. Phenomenax column (Phenomenex C18 kinetex column 100×4.6 mm, 5µm) along with a guard column (Phenomenex SecuritGuard Catridges, C18, 4×2 mm) was used at a flow rate of 0.5 mL/min. A gradient elution method was employed. Mobile Phase A (HPCL water with 0.1% formic acid) at 10% and mobile phase B (ACN with 0.1% formic acid) at 90% were ran for first 2 min followed by a linear gradient to reach 100% of Phase B at 18 min. Standards were prepared in PBS buffer ranging from 3.1 to 100 µg/mL. DAD detector was set at 280 nm to determine UV absorbance. Injection volumes was 50 µL.
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8

Speciation Analysis by ICPMS-2030

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An ICPMS-2030 mass spectrometer (Shimadzu, Tokyo, Japan), directly coupled with a Prominence LC 20Ai inert system, was used for creating the new speciation method. The LC inert system allowed us to eliminate the possibility of metal background leaching from the mobile phase and enabled us to obtain the lowest possible detection limit, which is required for speciation analysis. The ICP–MS operated at 1.2 kW with 8.0 L·min−1 Ar plasma gas flow, 0.7 L·min−1 nebulizer Ar gas flow, and 1.1 L·min−1 auxiliary Ar gas flow. The concentric (MicroMist) nebulizer with 0.6 mL·min−1 (carrier) argon gas flow was used for nebulizing the HPLC eluate. The sampling depth was set to 5.0 mm. The spray chamber temperature was set to 3 °C. Optimized conditions of the collision cell were −90 V of cell gas voltage, 7.0 V of energy filter voltage, and a 9.0 mL·min−1 cell gas (He) flow rate. The HPLC was equipped with binary pumps LC 20Ai, an autosampler (SIL 20AC), a vacuum degasser (DGU20A3R), a heated column compartment (CTO 20AC), and a controller (CBM 20A) (Shimadzu, Japan). Polypropylene autosampler vials were used, because of the possibility of contamination of the samples with arsenate if using glass vials. The vials were cleaned with dilute nitric acid and thoroughly rinsed with ultrapure deionized water (UPW) (Merck, Kenilworth, NJ, USA) [55 (link)].
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9

HPLC-DAD Analysis of Crude Extract

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The HPLC–DAD analysis of the crude extract and all collected fractions was performed on a Shimadzu HPLC (Tokyo, Japan) equipped with a degasser (DGU-20 A 3R), binary pump (LC-20AD), autosampler (SIL-20 AHT) and DAD detector (SPD-M20 A). The separations were carried out on a Zorbax Eclipse XDB C18 stainless-steel (250 × 4.6 mm, 5 μm) column, following the conditions described by Luca et al. [34 (link)]. Rutamarin content in the crude extract was determined by using the same method with the help of a calibration curve plotted with the corresponding standard (linearity range: 25–250 μg/mL, regression equation: y = 19373x − 31740,regression coefficient R2= 0.9998).
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10

HPLC Analysis of Compounds

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The HPLC analysis was conducted with a Shimadzu LC-20A Prominence Series system (Shimadzu Corporation, Kyoto, Japan) equipped with a quaternary pump (LC-20AD), vacuum degasser (DGU-20A3R), autosampler (SIL-20A), column oven (CTO-20A), and photodiode-array detector (SPD-M20A). The chromatographic data were interpreted using LabSolutions Multi-PDA software. Chromatographic separation was performed on a YMC Triart C18 column (4.6 × 250 mm i.d., 5 μm). The column oven was maintained at 40°C, the detection was conducted at λ = 207 nm, and online UV absorption spectra were recorded in the range of 190 to 400 nm. The gradient elution was performed under the following conditions: initial mobile phase, acetonitrile/0.1% trifluoroacetic acid in water = 15 : 75 (v/v), 0∼15 min; 15 : 75 to 35 : 65 (v/v), 0∼10 min; 35 : 75 to 50 : 50 (v/v), 10∼20 min; 50 : 50 to 100 : 0 (v/v), 20∼25 min; and 100 : 0 (v/v), 25∼30 min. The flow rate was 1.0 mL/min, and the injection volume was 5 μL.
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