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Neutravidin protein

Manufactured by Thermo Fisher Scientific
Sourced in United States

NeutrAvidin protein is a modified form of avidin, a naturally occurring protein that binds strongly to biotin. NeutrAvidin exhibits reduced non-specific binding compared to traditional avidin, making it suitable for various biotechnology and research applications.

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15 protocols using neutravidin protein

1

ELISA Optimization with Triton X-100

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Owing to the limitation of available serum samples, ELISA was performed with 1% Triton X-100 (Thermo Fisher Scientific, #28314) treated plasma fractions. ELISA was performed in similar conditions as described above with the following modifications. Nunc Maxisorp flat-bottom 96-well plates (Thermo Fisher Scientific, #442404) were coated overnight with 50 μL per well of 0.5 μg/mL of NeutrAvidin protein (Thermo Fisher Scientific, #31050). Blocking was performed for 1 hour with 0.01% polyvinyl alcohol (PVA; Sigma-Aldrich, #341584) in 0.1% PBST (blocking buffer) prepared from stock of 0.5% PVA w/v in distilled H2O. Peptide coating was performed at 1:2000 dilution for 1 hour. Secondary antibody was incubated for 1 hour in blocking buffer at 1:1000 dilution. Development was performed with 50 μL of TMB and stopped with 50 μL of 0.16 M sulfuric acid.
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2

Antibody Labeling and Cell Culture Protocols

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HeLa cells were cultured in Dulbecco’s Modified Eagle Medium (Life Technologies # 10313–021) supplemented with 10% fetal bovine serum (HyClone), penicillin-streptomycin, and 2 mM L-glutamine, and cells were maintained at sub-confluence.
Anti-EGFR-AF647 antibody (anti-EGFR, R-1, sc-101) was purchased from Santa Cruz Biotechnology. Anti-alpha-tubulin (T6074) and anti-beta-tubulin (T8328) antibodies were purchased from Sigma. Anti-clathrin was purchased from Abcam (Clathrin heavy chain, ab21679). All primary antibodies were either purchased pre-conjugated to AF647 or were conjugated directly (see below) using AlexaFluor647 carboxylic acid, succinimidyl ester (A-20006), purchased from Life Technologies, with the exception of Anti-clathrin, which was directly conjugated using the APEX AlexaFluor-647 antibody labeling kit (Life Technologies, A10475) due to the presence of carrier proteins. AlexaFluor-647 phalloidin was purchased from Life Technologies (A22287). Sodium borohydride was purchased from EMD (SX0380-3). Photocleavable biotin NHS (PC-biotin-NHS) was purchased from Ambergen, and purified NeutrAvidin protein was purchased from ThermoScientific (31000).
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3

TGF-βRII-Ig Binding to TGF-β1 by ELISA

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The binding of TGF-βRII-Ig to TGF-β1 was evaluated by ELISA. A 96-well ELISA microplate (SUMITOMO BAKELITE, Akita, Japan) was coated with 10 μg/mL of TGF-βRII-Ig or Control IgG-B diluted in PBS at 37°C overnight. After washing with PBS containing 0.05% Tween20 (KANTO KAGAKU, Tokyo, Japan), the plate was blocked with Super Block (Thermo Fisher Scientific) at 37°C for 1 h. Recombinant human TGF-β1 (240-B/CF, R&D systems) was added to the plate at various concentrations (4-fold dilution from 8 to 0.125 ng/mL), followed by incubation at 37°C for 1 h. Then, 1 μg/mL biotinylated chicken anti-human TGF-β1 antibody (R&D systems) was added and incubated at 37°C for 1 h. The reaction was developed using peroxidase-conjugated NeutrAvidin protein (Thermo Fisher Scientific) and TMB One Component Substrate (Bethyl Laboratories, Montgomery, TX, USA) and then stopped with 0.18 M H2SO4. As a dilution buffer for recombinant TGF-β1, anti-TGF-β1, and NeutrAvidin, PBS containing 1% bovine serum albumin was used. The absorbance was measured at 450 nm with the MTP-900Lab (CORONA ELECTRIC).
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4

Fabrication of Lateral Flow Assay

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FeSO4·7H2O (>99%), FeCl3 (97%), NH4OH, oleic acid (90%), myristic acid (>98%), and lauric acid (>98%) were purchased from Merk Schuchardt OHG (Hehenbrunn, Germany) and used without any further modification.
Neutravidin protein was obtained from Thermo Fischer Scientific (Waltham, MA, USA). 1-ethyl-3-[3-dimethylpropyl] carbodiimide (EDC), bovine serum albumin (BSA), biotin-conjugated bovine serum albumin (BBSA), n-hydroxysuccinimide (NHS), 2-(n-morpholino) ethanesulfonic acid (MES), and Tween20 were purchased from Sigma-Aldrich (Madrid, Spain). Glass fiber membranes (GFCP001000), used as sample pad and backing cards (HF000MC100), were purchased from Millipore (Darmstadt, Germany). Other materials used were nitrocellulose membranes (UniSart CN95, Sartorius, Spain) and absorbent pads (Whatman, Piscataway, NJ, USA).
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5

Biotinylation Assay for Cell Surface Proteins

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Biotinylation assays were performed as previously described, with modifications by Acuña et al., 2013 (link). Briefly, cells (1 × 108) were labelled with Sulfo-NHS-LC-Biotin (Thermo Fisher Scientific, Rockford, IL, USA). Cells were washed three times in ice-cold PBS 1X Ca++/Mg++ (pH 7.4) to remove any contaminating proteins and 1mM of Sulfo-NHS-LC-Biotin diluted in ice-cold PBS 1X Ca++/Mg++ (pH 7.4) was added per total reaction volume. Cells labelled with biotin were incubated at 4 °C for 30 min, washed three times with ice-cold PBS 1X Ca++/Mg ++ (pH 7.4) and the free biotin was blocked with a solution of 50 mM Tris-HCl and again washed three times with ice-cold PBS 1X Ca++/Mg++ (pH 7.4). The labelled cells were homogenised in 200 µl of buffer RIPA with Triton X-100 and protease inhibitors and then precipitated by continuous mixing with 40 µl of immobilised NeutrAvidin Protein (Thermo Fisher Scientific, Rockford, IL, USA) for 4 hours at 4 °C. The precipitates were washed four times in ice-cold PBS 1X Ca++/Mg++ (pH 7.4). The resin-bound complex was boiled in SDS-PAGE sample buffer. Samples were resolved by 10% (w/v) SDS– polyacrylamide gels and Western blot analysis was performed.
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6

Functionalized PLGA Nanoparticle Synthesis

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Poly lactic-co-glycolic acid (50:50 and 75:25 PLGA) was acquired from Evonik Industries. Poly ethylene-maleic acid (PEMA), poly vinyl alcohol (PVA), chitosan, Dulbecco’s phosphate buffered saline (DPBS), and N-(3-Dimethylaminopropyl)-N-ethyl carbodiimide (EDAC) were purchased from Sigma–Aldrich. DiO and NeutrAvidin protein were acquired from Thermo Fisher. Sialyl Lea-PAA-biotin (SLea) was acquired from GlycoTech. Cutaneous lymphocyte-associated antigen (CLA-PE) was obtained from Miltenyi Biotec. Fluorescein rabbit antimouse IgG-1 was purchased from Jackson Immunoresearch. MESF calibration bead was purchased from Bangslab. IL-1β was acquired from Fitzgerald. Human umbilical vein endothelial cells (HUVECs) and endothelial growth medium-2 (EGM-2 medium) were purchased from Lonza. Colorimetric cell counting kit-8 (CCK-8) reagent was obtained from Dojindo Molecular Technologies. All reagent grade organic solvents were purchased from VWR.
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7

Quantifying VAR2CSA-CSPG Binding Affinity

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The binding affinity of the VAR2CSA recombinant proteins to CSPG was measured using a Biacore T200 system (GE Healthcare). Briefly, decorin (Sigma) was biotinylated non-specifically at lysine residues in the protein core using Sulfo-NHS-LC-Biotinylation Kit (Thermo). NeutrAvidin protein (Thermo Scientific) was covalently immobilized on a Series S sensor chip CM5 (GE Healthcare) using N-hydroxysuccinimide (NHS) amine coupling chemistry, in flow cell 4 (Fc-4), while a biotin-labeled Pfs25 recombinant was similarly immobilized in the reference Fc-3. Protein binding affinity to the immobilized CSPG was obtained by subtracting the response on reference Fc-3 from that on Fc-4, after injection of a serial dilution of the full-length VAR2CSA recombinants. The affinity analysis was performed in Biacore T200 evaluation software (version 3.2) and the steady-state model was used to calculate the dissociation constant KD.
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8

RGD-Functionalized Supported Lipid Bilayers

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Lyophilized lipids were purchased from Avanti lipids; SUVs were made. Cyclic RGD was purchased from Peptide international (No. PCI-3895-PI). NeutrAvidin Protein, Dylight 650 was purchased from Thermofisher Scientific (No. 84607). To assemble RGD-functionalized supported lipid bi-layers, DOPC was doped with 1,2-dipalmitoylsn-glycero-3-phosphoethanolamine-N-cap biotinyl (16/0 Biotinyl Cap PE) on clean coverslips (No.1.5). These were functionalized with biotin RGD using Dylight 650-Neutravidin as a linker between biotin on the lipid and RGD53 (link).
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9

Synthesis and Functionalization of Iron Oxide Nanoparticles

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Iron (III) chloride hexahydrate was purchased from Across (99%) and sodium oleate from TCI America (97%). Neutravidin protein, Alexa Fluor 647-NHS ester and Biotin-NHS ester were purchased from Thermo Fisher Scientific. LOR photoresist and MF-319 developer were obtained from Microchem and S1805 photoresist was obtained from Microposit. Other reagents and chemicals were purchased from Sigma-Aldrich and used as received unless otherwise stated.
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10

Biomolecular Immobilization Protocol

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Glass slides (25 × 75 mm, thickness #5, Menzel-Gläser) were obtained from VWR. Custom-made fluid cell stickers with an approximate internal volume of 20 μl were obtained from Grace Biolabs (USA). PBS tablets, NaCl, Cortisol 3-CMO, NHS, DCC-Urea, EDC, HOBt, DIPEA, sucrose, trehalose, and bovine serum albumin (BSA) were purchased from Sigma-Aldrich. NeutrAvidin protein, EZ-Link™ NHS-PEG4-Biotin, Dynabeads MyOne Streptavidin C1 and Dynabeads M-270 Streptavidin were purchased from ThermoFisher Scientific. mPEG-biotin (MW 1kDa) was purchased from Nanocs. Poly(l-lysine)-grafted poly(ethylene glycol) was purchased from SuSoS (Switzerland) with a grafting ratio of 3.5. The molecular weight of the PLL backbone and PEG side chains are 20 and 2 kDa respectively. Azide functionalized PLL-g-PEG (Nanosoft Biotechnology LLC, USA) is composed of a 15 kDa PLL backbone and 2 kDa PEG chain with a grafting ratio of 3.5. The ssDNA oligonucleotides (standard desalting and HPLC purification for chemically modified DNA) were purchased from IDT (Integrated DNA Technologies). The sequence and modification of all ssDNAs are listed in Supplementary Table 3.
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