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Expi293 system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Expi293 system is a transfection platform designed for the rapid and efficient production of recombinant proteins in mammalian cells. The system utilizes a human embryonic kidney (HEK) 293 cell line that has been engineered for high-level protein expression. The Expi293 system provides a streamlined workflow for protein production, simplifying the process of obtaining high-quality recombinant proteins for a variety of applications.

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16 protocols using expi293 system

1

Recombinant Protein Production and Purification

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The extracellular domains of human CD33 (positions 18–256) and human EGFR (positions 25–642) were cloned with a C-terminal TEV protease cleavage site, 8× polyhistidine, and AviTagTM (Avidity, LLC). For the scFvs, the heavy and light-chain variable domains were paired using a (GGGGS)4 linker and fused to a C-terminal 8× polyhistidine tag. All constructs were expressed using the Expi293 system (Thermo Fisher Scientific) and purified by Ni Sepharose Excel column (GE Healthcare Life Sciences) followed by size-exclusion chromatography over a Superdex 75 or Superdex 200 column (GE Healthcare Life Sciences) equilibrated in 1× PBS (Corning). Site-specific biotinylation of CD33 through the AviTagTM was performed according to the manufacturer’s protocols. scFv-Fc constructs reformatted from scFv libraries were purified by Protein A affinity chromatography (GE Healthcare Life Sciences).
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2

SARS-CoV-2 RBD Protein Production

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SARS-CoV-2 RBDwildtype, was cloned as a synthetic gene into pTWIST-CMV-BetaGlobin-WPRE-Neo vector (Twist Biosciences, CA, USA) and expressed in HEK293F cells through the Expi293 system (ThermoFisher Scientific, MA, USA). Purification was performed by IMAC using a HiTrap TALON crude column (Cytiva, Uppsala, Sweden).
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3

Transient Expi293 Monoclonal Antibody Expression

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Monoclonal antibody was transiently expressed in the Expi293 system (ThermoFisher, A14635). In brief, antibody HC and LC plasmids were co-transfected at a ratio of 1:2.5 with transfection reagent FectoPRO (Polyplus 116-010). After 24 h of transfection, 300 mM of sterile sodium valproic acid solution (Sigma-Aldrich, P4543) and 45% D-(+)- glucose solution (Sigma Aldrich, G8769-100ML) were added to feed cells. After 4–5 days of transfection, supernatants were collected, sterile-filtered (0.22 μm), and IgG was purified with Protein A sepharose beads (GE Healthcare 17-5280-04).
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4

Constrained Bispecific Anti-CD3/EGFR Antibody

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TAK-186 was designed by creating a constrained anti-CD3 scFv with a short (G3S)2 linker that functions to prevent the active anti-CD3 VH and VL domains from pairing into a functional, CD3 binding scFv. This constrained scFv is flanked on either side by anti-EGFR binding sdAbs linked by (G3S)2 linkers. TAK-186 utilized an MMP9-cleavable linker (SGGPGPAGMKGLPGS) to connect a second constrained scFv with a short (G3S)2 linker to prevent the inactivate anti-CD3 VL and VH domains from pairing into an scFv. This structure forces the COBRA into a single chain diabody.26 (link) A his6-tagged anti-HSA sdAb was attached to the C-terminus to provide extended serum half-life. In NCL-186 a non-cleavable (G4S)3 linker replaces the MMP9 linker present in TAK-186. COBRA molecules were expressed via transient transfection using the Expi-293 system (ThermoFisher Scientific), purified by protein A using standard techniques, and analyzed as previously described.25 (link)
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5

Transient Expression and Purification of IgGs

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Transient expression of IgGs was carried out using the Expi293™ system (Thermo Fisher, Waltham, MA, USA) according to protocols provided by the supplier. Cells were transfected with two plasmids for mAb production of with four plasmids for bsAb production, using a 1:2 heavy-chain: light chain plasmid DNA ratio. IgGs were purified from conditioned media harvested 4–6 days post-transfection. The conditioned medium was filtered using a 0.45 µm filter and the IgG was purified by protein-A (or MabSelect, GE Healthcare, Chicago, IL, USA) affinity chromatography or by sequential Kappa-select–Lambda-select (GE Healthcare, Pittsburgh, PA, USA) affinity chromatography according to the supplier’s recommendations. Purified IgGs were stored in Phosphate-buffered saline (PBS) at −80 °C.
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6

Recombinant TFPI Mutant Expression

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Mouse cDNAs were from Origene Technologies; mutants were produced by PCR-directed mutagenesis. A pcDNA3.4 vector was use to express rmTFPI (mature amino acids 1–157) wild-type (WT) and rmTFPI’s K1(K32I) and K2(R103L) containing mutations at their critical P1 residues, rmTF, rmFX, and rmFVII in the Expi293 system (Thermo Fisher). ELISA quantified rmTFPI levels. Cells expressing rmTF were lysed by a freeze-thaw cycle in PBS + 5 mM EDTA; membranes isolated by centrifugation (10,000g, 10 min), suspended in PBS and stored frozen. rmTF, rmFVII and rmFX were measured in clotting assays using human normal or factor-deficient plasmas (George King Biomedical). rmFXa was generated by a 30 min incubation of rmFX with 1% (w/w) FX-coagulant protein (XCP, Enzyme Research Laboratories).
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7

Single-Cell B Cell Receptor Reconstruction

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For B cell receptor reconstruction from the scRNAseq data, we used BraCeR18 (link) assigning the sequences to the IMGT (Immunogenetics) database. The output tables were filtered based on completeness and expression levels of the paired V(D)J transcripts using a customized R script. Combined heavy and light chain sequences were aligned using Clustal Omega. The alignment was visualized using FigTree. Selected immunoglobulin heavy and light chain pairs were cloned into expression vectors19 (link). Recombinant monoclonal antibodies were expressed in the Expi293 system (Thermo Fisher Scientific). Purified antibody concentration was determined by ELISA.
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8

Transient Expression of Soluble FcγRs and poIgGs

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Soluble FcγRs and poIgGs were expressed in human embryonic kidney 293F (HEK293F) suspension cells cultured in shaker flasks (120 rpm, 37°C, 5% CO2, 85% humidity) using F17 expression medium supplemented with Pluronic and GlutaMAX (Gibco). Plasmids coding for FcγRs were transfected alone and poIgG heavy chains were co-transfected in equimolar ratio with plasmids coding for poIg-kappa light chain. Transient transfection was performed using 293free (Merck Millipore) premixed with OptiMEM (Gibco) and expression was enhanced by feeding and addition of valproic acid. The fed-batch culture was harvested by centrifugation 7 days after transfection and the supernatant was cleared by filtration.
Full length FcγRs were transiently expressed using the Expi293 system (Thermofisher). Suspension cells were seeded in 6 well-plates (120 rpm, 37°C, 5% CO2, 85% humidity) and co-transfected with porcine or human FcγRs together with the related FcR-γ chain in an equimolar ratio. The transfected cells were used 48 h post transfection.
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9

Purification of PTH1R Extracellular Domain

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PTH1R ECD-TEV-human Fc (residues M1-G188, Uniprot: Q03431) was expressed using the pMH vector (UCB proprietary) using the Expi293 system (Thermo Fisher). The ECD was captured from the supernatant using Protein A affinity resin (MabSelect SuRE, GE Healthcare) in batch. The resin was washed with 20 CVs of Tris-buffered saline (TBS) and incubated overnight with 200 µg of TEV-6His protease, at 4 °C. The resin was sedimented and the supernatant containing TEV protease and PTH1R-ECD was recovered. Ni-NTA beads were used to remove TEV-6His and the PTH1R- ECD was buffer exchanged into TBS pH 8.0 using 50 kDa molecular weight cut-off filters (Amicon, Millipore), concentrated to 11 mg/ml, flash-frozen and stored at −80 °C for future use. The protein was assessed for purity by SDS-PAGE and Western blot analysis. PTH (1–34) binding function of the purified ECD was confirmed using isothermal titration calorimetry (ITC).
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10

Purification and Characterization of E-301 Sialidase

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The sequences encoding for E-301 and E-301-LOF containing Salmonella typhimurium sialidase were cloned into the mammalian expression vector pCEP4 (Thermo Fisher Scientific). Human embryonic kidney 293T cells were then transiently transfected with the DNA constructs using the Expi293 system and following standard protocols according to the manufacturer’s instructions (Thermo Fisher Scientific). Purification of E-301 and E-301 LOF was performed directly from transfection harvests using a HiTrap Protein A affinity column (GE Healthcare) and eluted with 1 M arginine (pH 3.9). Anion-exchange chromatography was used as a secondary purification method, and the final product was dialyzed into PBS (pH 7.4). The biochemical characterization of E-301 and E-301 LOF, including purity, HER2 binding affinity, and enzymatic activity, was conducted as described previously (25 ).
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