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2 protocols using su11274

1

Organoid-Based Drug Sensitivity Assay

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For in vitro assay, organoids were collected and dissociated into single cells by digesting with Accumax. The dissociated cells were counted using a TC20 Automated Cell Counter (Bio‐Rad, Hercules, CA, USA). For cell proliferation assays, 2 × 104 single cells/well were plated in a 24‐well plate with solidified Matrigel to form organoids, or an ultra‐low attachment 24‐well plate to generate spheroids. Cell viability was analyzed with CellTiter‐Glo3D Cell Viability Assay (Promega, Fitchburg, WI, USA) at 5 time points (day 0, 3, 7, 10, and 14) in triplicate, and the results were normalized to the values on day 0. For the drug sensitivity assay, 5 × 103 single cells/well were plated into PrimeSurface 96U (Sumitomo Bakelite, Tokyo, Japan) in triplicate. At 48 hours after plating, paclitaxel (Wako, Osaka, Japan), cisplatin (Wako), gemcitabine hydrochloride (Wako), crizotinib (Tocris Bioscience, Bristol, UK), and SU11274 (Cayman Chemical, Ann Arbor, MI, USA) were dispensed at 5 serially diluted doses from 5 to 100 nmol/L, from 1 to 100 μmol/L, from 1 to 100 nmol/L, from 100 nmol/L to 10 μmol/L and, from 100 nmol/L to 10 μmol/L, respectively, and analyzed in triplicate following 96 hours of drug incubation. The mean ± SD of the results from 3 independent experiments is shown for each drug.
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2

Modulators of Amino Acid Transporters and Signaling Pathways

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IMD-0354, TPCA-1, Baricitinib were purchased from Toronto Research Chemicals (Ontario, Canada). Torin 1, rapamycin, Ruxolitinib, Y-27632 were obtained from Selleckchem (Houston, TX), SU11274 and (S)-H-1152 were obtained from Cayman Chemical (Ann Arbor, Michigan). Human TNF-α was purchased from Cell Signaling Technology. pLX304, pLX304-V5-SLC1A5 and pLX304-V5-SLC38A2 were purchased from DNASU Plasmid Repository (Phoenix, CA). All siRNAs were purchased from Sigma-Aldrich. For SLC1A5, siRNA IDs are SASI_Hs01_00162267 and SASI_Hs01_00162267. For IKK1, siRNA IDs are SASI_Hs01_00206921 and SASI_Hs01_00206922. For IKK2, siRNA IDs are SASI_Hs01_00156170 and SASI_Hs01_00156172.
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