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Ultrascan 4k

Manufactured by Ametek

The Ultrascan 4k is a high-resolution laboratory scanning instrument capable of capturing detailed images and data. It utilizes advanced imaging technology to provide accurate and precise measurements. The core function of the Ultrascan 4k is to enable detailed analysis and inspection of samples within a laboratory setting.

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5 protocols using ultrascan 4k

1

Electron Microscopy Analysis of Organic Films

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SEM
analysis was performed
using a Quanta 450 FEG SEM commonly without prior metal deposition.
TEM was carried out on an FEI Tecnai F20 microscope, operating at
200 kV, and equipped with a Schottky field emission gun and a twin-blade
anticontaminator. All images were recorded using a Gatan 4K Ultra
Scan charge-coupled device camera. Since these organic material films
are sensitive to the electron beam irradiation, the films were normally
previewed rapidly at a dose of 20 e nm–2. Selected areas were then imaged at a dose level of 200 e nm–2, which did not cause radiation damage. A
drop of a solution of each compound in an organic solvent such as
CH2Cl2 or n-hexane was placed
on either ITO substrates for SEM or carbon-coated Cu grids for TEM.
After complete evaporation of the solvent in vacuum, the sample was
heated and cooled as described for the POM experiments.
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2

Cryo-EM Imaging of Kinesin-Decorated Microtubules

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Kinesin was desalted into EM buffer BRB80 with 0.05% (vol/vol) Nonidet P-40 (11332473001; Roche) and 2 mM DTT, supplemented with 0.5 mM ATP, using a Zeba spin desalting column and diluted to 1 mg/ml in the foregoing buffer supplemented with GTP to 1 mM (to maintain microtubule dynamics while making grids). After dilution, kinesin was spun at 80,000 × g at 4°C to remove any aggregates. Microtubules were diluted to 0.5 mg/ml in EM buffer supplemented with 1 mM GTP and applied to a glow-discharged C-flat grid (Protochips, Raleigh, NC) in the chamber of a Virtrobot (Mark II; Maastricht Instruments, Maastricht, Netherlands). Microtubules were allowed to adhere to the grid for 30 s. Kinesin was then applied to the grid twice, 4 μl each addition, briefly manually blotting after the first addition, to ensure complete decoration of the microtubules. The grid was then blotted for 4 s and plunged into ethane slush. Micrographs were collected on a Tecnai F20 transmission electron microscope (FEI, Hillsboro, OR) operating at 120 kV and equipped with a Gatan 4k Ultrascan charge-coupled device. Micrographs were collected using Leginon (Suloway et al., 2005 (link)) with a dose of 20 e2 and nominal magnification of 80,000×, giving a final size of 1.37 Å/pixel.
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3

Exocyst Complex Structural Analysis

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Carbon Film, 400 Mesh copper grids (Electron Microscopy Sciences) were glow discharged and exocyst holocomplex (1.9 μM) was applied for 10 minutes and blotted away with Whatman paper. Grids where washed twice with ddH2O before being stained with 0.75% uranyl formate for approximately 30s. Excess stain was removed by blotting, and samples were imaged using a JEOL 2200FS 200 kV with inline omega filter on a Gatan Ultrascan 4k 15 μm pixel camera at 30,000x magnification. Images were obtained at a defocus of -0.5-2.0 μm. Particles were manually selected using Boxer implemented in EMAN2.79 (link) Morphological model was generated in EMAN2 from 7052 particles over 75 micrographs to assess protein complex heterogeneity and dimensions.
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4

Cryogenic TEM Imaging of FTT5 LLNs

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Physicochemical properties of FTT5 LLNs were determined using the aforesaid methods. Cryo-TEM imaging of FTT5 LLNs were carried out by Tecnai F20 S/TEM (FEI, Hillsboro, OR). In addition, cryo-TEM images were captured using a Gatan UltraScan 4K charge-coupled device camera with the specimen temperature maintained lower than 170°C under low-dose conditions.
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5

Structural Analysis of C3b and iC3b Complexes

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Purified C3b, iC3b1, and iC3b were loaded onto glow-discharged carbon-coated copper grids and stained with 0.75% uranyl formate. Grids were imaged using a Tecnai T20 transmission electron microscope (Thermo Fisher Scientific) operating at 120 kV with an objective lens spherical aberration coefficient of 2 mm. Images were acquired at 56000× magnification with a defocus of –2 μm on a Gatan Ultrascan 4k charged coupled device (Gatan, Inc.) binned 2× for a final pixel size of 4.236 Å per pixel. Image data was processed by EMAN2 (ref. 59 (link)) and Xmipp60 (link) as previously described61 (link). Briefly, 6,927, 5,997, 8,022 particles were manually picked for C3b, iC3b1 and iC3b, respectively, using e2boxer.py from EMAN2 (ref. 59 (link)), and extracted using Xmipp60 (link). The CTF of each micrograph was estimated and corrected by phase flipping using Xmipp. Finally, each data set was classified into 30 classes by CL2D protocol in Xmipp60 (link).
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