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7 protocols using lc ms grade methanol meoh

1

Quantitative Metabolite Profiling by LC-MS

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Analytical standards of all analytes were purchased from Sigma Aldrich (Steinheim, Germany). Isotopically labeled internal standards (IS) were obtained as follows: PA-d4, NA-d4, and 3-IAA-d2 from Merck (Darmstadt, Germany); KA-d5 and Trp-indole-d5 from CDN isotopes (Pointe Claire, QC, Canada); XA-d4 from Santa Cruz Biotechnology (Dallas, TX, USA); 3-OH KYN-d3 from Buchem BV (Minden, Apeldoorn, Netherlands); QA-d3 and 5OH IAA-d6 from MedChemTronica (Sollentuna, Sweden); 3-OH AA-d3 and I3LA-d5 from LGC Standards (Łomianki, Poland); and AA-ring-13C6 from Eurisotope (Saint-Aubin, France). Sodium carbonate (Na2CO3), derivatization reagent (BNAP), ascorbic acid (AsA), and formic acid (FA) for LC-MS were obtained from Sigma Aldrich. LC-MS grade methanol (MeOH) and acetonitrile (ACN) were acquired from Honeywell (Seelze, Germany). Ultra-pure water (MPW) was made from distilled water using the Merck Millipore purification system from Merck.
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2

LC-MS Analysis of Metabolites

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LC–MS grade methanol (MeOH) and water (H2O) were purchased from Honeywell (Muskegon, MI, USA). LC–MS grade acetonitrile (ACN) was purchased from Merck (Darmstadt, Germany). LC–MS grade methylene dichloride (CH2Cl2) was purchased from Fisher Scientific (Morris Plains, NJ, USA). Ammonium hydroxide (NH4OH) and ammonium acetate (NH4OAc) were purchased from Sigma (St. Louis, MO, USA). The chemical standard succinoadenosine was purchased from J&K (Shanghai, China), while other chemical standards were purchased from TopScience (Shanghai, China).
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3

Analytical Standards for Metabolomics

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Reagent grade potassium carbonate (K2CO3), potassium bicarbonate (KHCO3), sodium hydroxide (NaOH) and hydrochloric acid (HCl) were obtained from Sigma-Aldrich (Steinheim, Germany). Analytical grade formic acid (HCOOH) and LC-MS grade isopropanol (IPA), acetonitrile (ACN) and water (H2O) were purchased from Fisher Scientific (Fairlawn, NJ, USA). LC-MS grade methanol (MeOH) was purchased from Honeywell International Inc. (Morristown, NJ, USA). HPLC grade dichloromethane (DCM), anhydrous ACN, and 6-aminoquinoline-N-hydroxysuccinimidyl carbamate (AQC) for derivatization of amino acids were purchased from Santa Cruz Biotechnology, Inc. (SCB, Dallas, TX, USA). Amino acids, bile acids and the other analytes were obtained from Sigma-Aldrich, SCB or Cambridge Isotope Laboratories Inc. (CIL, Tewksbury, MA, USA), as listed in [16 (link)]. bile acids lithocholic acid (LCA), glycolithocholic acid (GLCA) and ursodeoxycholic acid (UDCA) were obtained from CIL.
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4

Liver S9 Fraction Characterization

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Pooled human liver S9 fraction (H0610.S9) and NADPH regenerating system (K5100-5) were purchased from Sekisui Xenotech (Kansas City, KS, USA). The cofactors adenosine 3′-phosphate 5′-phosphosulfate lithium salt hydrate (PAPS), acetyl-coenzyme A (acetyl-CoA), uridine diphosphate glucuronic acid (UDPGA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The glutathione (GSH) was purchased from J&K (Shanghai, China). The NIST urine (SRM 3667) and NIST plasma (SRM 1950) samples were purchased from Ango Biotechnology Co. (Shanghai, China). LC–MS grade methanol (MeOH) and water (H2O) were purchased from Honeywell (Muskegon, MI, USA). LC–MS grade acetonitrile (ACN) was purchased from Merck (Darmstadt, Germany). Ammonium hydroxide (NH4OH) and ammonium acetate (NH4OAc) were purchased from Sigma (St. Louis, MO, USA). Other chemical standards were purchased from Sigma-Aldrich (St. Louis, MO), J&K (Shanghai, China), and TopScience (Shanghai, China).
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5

Quantification of 8-isoPGF2α in Biological Samples

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LC-MS grade methanol (MeOH), LC-MS grade acetonitrile, and HPLC grade ethyl acetate were provided by Honeywell (Charlotte, USA); formic acid, hexane, 1-butanol, sodium chloride, magnesium sulfate, and zinc sulfate heptahydrate were purchased from Sigma-Aldrich (Steinheim, Germany); chloroform was provided by VWR Chemicals BDH (Avantor, USA); analytical standards of 8-isoPGF2α and 8-isoPGF2α-d4 were purchased from Cayman Chemicals (Ann Arbor, MI, USA). Deionized water was produced in the laboratory with the ELGA Veolia Chorus system (ELGA Lab Water, UK). The stock solution of 8-isoPGF2α and 8-isoPGF2α-d4 (IS) were prepared in methanol and stored at -20°C.
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6

Lipid Standards for Mass Spectrometry

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16:0‐LPA, 18:0‐LPA, 16:0‐alkyl‐LPA, 18:0‐alkyl‐LPA, 18:1‐alkyl‐LPA, 16:0‐LPCs, 18:1‐LPC as well as 17:0‐LPA and LPC 17:0 as internal standards were purchased from Avanti Polar Lipids. LPAs 18:2, 18:3, 20:0, 20:4 were obtained from Echelon Biosciences, Inc. (Salt Lake City, UT, USA) and LPA 18:1 from Cayman Chemical Company (Ann Arbor, MI, USA). LCMS grade water, formic acid (HCOOH), chloroform, and ammonium formate were purchased from VWR International or Merck (both Darmstadt, Germany) and LCMS grade methanol (MeOH) was purchased from Honeywell (Seelze, Germany).
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7

Quantification of Mycotoxin Standards

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Mycotoxin standards—DON, ZEN, T-2, and HT-2 toxins—were obtained from Romer Lab (Cheshire, UK). LC-MS grade methanol (MeOH) and acetonitrile (MeCN) were purchased from Honeywell (London, UK). Ultrapure water (resistivity of 18.2 MΩ-cm) was obtained from a Milli-Q system (Millipore, Burlington, MA, USA). LC-MS grade formic acid and syringe filters (PTFE, 0.22 μm pore size) were supplied by Sigma-Aldrich (St. Louis, MO, USA) and Waters (Wilmslow, UK), respectively.
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