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2 protocols using suitable secondary antibodies

1

Immunohistochemistry of Retina and Optic Nerve

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Mice were given a lethal dose of anesthesia (ketamine and xylazine) and then perfused with phosphate-buffered saline (PBS) and 4% paraformaldehyde (PFA) (Sigma-Aldrich). Retinas and optic nerves were dissected, fixed in 4% PFA overnight, and then dehydrated in 30% sucrose for 6 hours. The resulting retinas and optic nerves were embedded into optimal cutting temperature compound (Sakura) at −80°C and then cryosectioned at −20°C (25 μm for retinas and 8 μm for optic nerves). These sections were blocked with 0.1% Triton X-100 in 4% normal goat serum for 30 min and then incubated overnight with the primary antibodies, including Tuj 1 (neuron-specific class III beta-tubulin) (BioLegend, catalog no. 801202; mouse monoclonal antibody), p-STAT3 705 (Cell Signaling Technologies, catalog no. 9145; rabbit monoclonal antibody), and Alexa Fluor 488 (Invitrogen, catalog no. A-11094; rabbit polyclonal antibody). The sections were washed with PBS (three times) and then incubated with suitable secondary antibodies (Invitrogen) for 2 hours. After wash with PBS (three times), the sections were mounted on coverslips for imaging.
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2

Immunocytochemistry for Cellular Characterization

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Plated cells were fixed in 4% paraformaldehyde in phosphate-buffered saline (PBS) for 30 min. Cells were washed three times with PBS after each step and then blocked with 5% bovine serum albumin (Nacalai Tesque) for at least 1 h at room temperature. The cells were permeabilized prior to primary antibody incubation. Cells were then incubated with primary antibodies at 4 °C overnight and washed three times with PBS. The following primary antibodies were used in this assay: NANOG (1:500; ReproCELL, Yokohama, Japan), SSEA4 (1:1,000; Chemicon, Darmstadt, Germany), βIII-tubulin (1:2,000; Covance, Princeton, NJ), MAP2 (1:1,000; Millipore, Billerica, MA), SMI-32 (1:2,000; Covance), GFAP (1:1,000; DAKO, Glostrup, Denmark), TFG (1:1,000; Protein Tech, Rosemont, IL), Ubiquitin (1:1,000; DAKO), FK2 (1:1,000; MBL, Nagoya, Japan), SOX17 (1:1,000; R&D Systems, Minneapolis, MN), and αSMA (1:500; DAKO). Suitable secondary antibodies (Invitrogen) were incubated with samples at room temperature for 1 h, and washed three times with PBS. Nuclear staining was also performed with 0.5 g/mL 4′,6-Diamidino-2-Phenylindole (DAPI) for 5 min, and then the cells were washed three times with PBS. Coverslips were mounted in ProLong Gold antifade reagent (Invitrogen). Images were collected using LSM710 (Carl Zeiss, Oberkochen, Germany) or IN Cell Analyzer 6000 (GE Healthcare).
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