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8 protocols using poly l lysine (pll)

1

Dissociated Rat Hippocampal Neuron Culture

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Dissociated neuronal cultures were prepared from E18 embryonal Sprague Dawley rat hippocampi of mixed sex. All experiments on animals were approved and performed in accordance with the guidelines and regulations by the Dalhousie University Committee on Laboratory Animals (UCLA Protocol #17–128). Following dissection, hippocampi were incubated in 0.03% trypsin for 15 min and dissociated using a fire-polished Pasteur pipette (Matz et al., 2010 (link)). Neurons were diluted in Neurobasal medium supplemented with B27 (Thermo Fisher, Waltham, MA, United States), 0.5 mM glutamine, 25 μM glutamate, and 5% fetal calf serum (FCS) and added at a density of 3–6 × 103cm-2 to 60-mm dishes containing 5, 16-mm coverslips coated with 0.1% (wt/vol) poly-L-lysine (Peptides International). After 4 h, the plating medium was replaced with serum-free Neurobasal supplemented with B-27, which attenuated but not completely prevented glial proliferation. For all experiments, cultures were transfected 10–14 days after plating using a calcium-phosphate precipitation protocol as previously described (Matz et al., 2010 (link)).
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2

Immunofluorescence Imaging of Mitochondria

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For immunofluorescence imaging, cells were grown on coverslips pre-coated with 1 µg/ml poly-L-lysine (Peptides International). Mitochondria were labeled by incubating cells with 200 nM MitoTracker (Life Technologies) at 37°C for 30 min, fixed in 4% paraformaldehyde and permeabilized with 0.1% Triton X-100 in PBS. Cells were blocked in blocking buffer (1xPBS with 2% glycerol, 50 mM ammonium chloride, 5% fetal bovine serum, and 2% donkey serum). Rabbit anti-myc and goat anti-GFP (Rockland Immunologicals) were diluted in blocking buffer at 1∶1000 and incubated overnight at 4°C. Cells were washed in PBS, reblocked and incubated with Alexa-488 conjugated donkey anti goat and Alexa-647 conjugated donkey anti rabbit secondary antibodies derived from donkey (Abcam and Jackson Immunologicals) at 1∶2000. Cells were again washed and mounted using ProLong Antifade reagent (Life Technologies). Images were acquired with a Zeiss LSM510 confocal microscope equipped with a 63× oil-immersion objective, excited with an argon laser at 488 nm filtered with NFT490 and BP505-530 Zeiss filters and HeNe laser at 543 (NFT565/BP575-615) and 633 nm (ChS1/650-730), and controlled by ZEN software (Zeiss).
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3

Immunoblotting Antibodies and Reagents

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Antibodies used for immunoblotting are as follows: Rat α-FLAG L5 (#637303; BioLegend), Rabbit α-HA, Rabbit α-GFP, Rabbit α-Sec62, Rabbit α-Sec63, Rabbit α-Sec61β, Rabbit α-BAG6, and Rabbit α-Sec61α (Chitwood et al., 2018 (link); Mariappan et al., 2010 (link); Snapp et al., 2004 (link)) are a gift from Dr. Ramanujan Hegde (MRC Laboratory of Molecular Biology, Cambridge, UK). Rabbit α-BiP (#11587-1-AP; Proteintech), Mouse α-HA (#901513; Biolegend), Mouse α-PDI (#MA3-018; Affinity Bioreagents), Goat α-Rat-HRP (#7077; Cell Signaling), Goat α-Mouse-HRP (#115-035-003; Jackson ImmunoResearch), Goat α-Rabbit-HRP (#111-035-003; Jackson ImmunoResearch), Goat anti-rat HRP (#7077S; Cell signaling), Goat α-RAT IgG-Cy2 (#112-225-167; Jackson ImmunoResearch), Goat α-Mouse IgG-Alexa657 (#A-21235; Invitrogen). Beads were purchased as follows: Strep-Tactin XT beads (#2-4010-010; IBA), Rat anti-FLAG L5 affinity gel (#651503; Biolegend), Protein A agarose (#CA-PRI-0100; Repligen), Mouse anti-HA magnetic beads (#88837; Pierce), Poly L-lysine (#OKK-3056; Peptides International). Rabbit Reticulocyte Lysate was purchased from Green Hectares (Ph:1-800-GHLYSAT). Detergents were purchased as follows: digitonin (EMD Millipore), Triton X-100 (Thermo Fisher Scientific), sodium deoxycholate (Sigma-Aldrich), SDS (Sigma-Aldrich), and Tween 20 (American Bioanalytical).
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4

Culturing and Modulating Hippocampal and Cortical Neurons

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Primary hippocampal and cortical neurons were cultured from E18 Sprague-Dawley rat pups as described previously (Perez-Otano et al., 2006 (link); Chowdhury et al., 2018 (link)). For immunofluorescence, hippocampal neurons were plated at a density of 10,000–15,000 onto 12-mm coverslips coated with a mixture of poly-DL-ornithine (Sigma) and laminin (Corning), and maintained in Neurobasal medium (Life Technologies) supplemented with 2% (v/v) B27 (Life Technologies), 2 mM GlutaMAX-I (Life Technologies), 1 μg/ml Gentamicin (Life Technologies), and 5% fetal bovine serum (FBS) (Atlanta Biologicals). The anti-mitotic agent 5-fluoro-2’-deoxyuridine was added to the cultures to prevent glial overgrowth. For biochemistry, cortical neurons were plated onto 60 mm dishes coated with poly-L-lysine (Peptide Institute Inc.) at a density of 1 × 106 cells per dish. Cultures were maintained for 17–19 days in vitro (DIV) before use. cLTD was induced by bath application of 50–75 μM NMDA in conditioned media for 5 min followed by washout for 15 min in conditioned media. For cLTP, cultures were treated for 5 min with 200 μM glycine in Mg2+ -free media in presence of 0.5 μM tetrodotoxin, 20 μM bicuculline, and 1 μM strychnine and then returned to Mg2+ -containing media without glycine for 15 min before harvesting.
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5

Culturing Primary Rat Hippocampal Neurons

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Primary rat hippocampal cultures were obtained from the Neuron Culture Service Center (University of Pennsylvania). Hippocampi were dissected from embryonic day 18 pups of mixed genders, obtained from timed pregnant Sprague Dawley rats. Cells were dissociated by incubation in trypsin-containing media. Cells were plated in Neurobasal medium supplemented with 2% B27 supplement (17504044; ThermoFisher). Cells were cultured in 24-well plates on 12-mm round glass coverslips (Bellco Glass) coated with 1 mg/ml poly-l-lysine (OKK-3056; Peptides International). After 1 d in culture, cytosine β-d-arabinofuranoside (C6645; Sigma) was added at a final concentration of 1.5 μM to inhibit glial proliferation. Cells were maintained at 37°C in a 5% CO2 incubator. Neurons were cultured for 1–4 d in vitro (DIV) and transfected with Lipofectamine 3000 (L3000; Invitrogen) for 48 h (DIV 3–6) before live imaging.
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6

Primary Rat Hippocampal Cell Culture

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U2OS, SH-SY5Y, and HeLa cells (ATCC) were maintained in DMEM supplemented with 10% fetal calf serum. Primary rat hippocampal cells were obtained and cultured as described [31 (link)]. Animal use for this purpose was approved by the Dalhousie University Committee on Laboratory Animals (approval number 19–108). Rats were sacrificed by anesthesia with isofluorane (5% v/v) followed by CO2 asphyxiation. Hippocampi were dissected from E18 Sprague-Dawley rat embryos, incubated with 0.03% trypsin for 15 minutes, and dissociated using a fire-polished Pasteur pipette. Cells were then plated on coverslips coated with 0.1% (w/v) poly-L-lysine (Peptides International) at a density of 3-6x103 cm-1 in Neurobasal Medium (Invitrogen) supplemented with 2% B-27 (Invitrogen), 50 μM glutamine, 25 μM glutamate, 5% fetal calf serum, 100 U/ml penicillin, and 100 μg/ml streptomycin. After 4 hours of plating, the medium was replaced with serum-free Neurobasal Medium supplemented with B-27 and 0.5 mM glutamine. One-third of the medium was replaced on a weekly basis until transfection.
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7

Antibodies and Reagents for Cellular Signaling

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Antibodies against P-Akt (#4060), P-mTORC1 (#5536), P-S6K (# 9234), P-PLCγ2 (#3871), and β-actin (#4967) were from Cell Signaling (Beverly, MA, USA); a pan histone antibody was from Sigma (#MABE71). Ficoll-Paque Plus was from GE Biosciences (Baie d’Urfé, Qc, Canada); Dextran T500 from Pharmacosmos (Holbæk, Denmark); endotoxin-free (< 2 pg/ml) RPMI 1640 from Wisent (St-Bruno, Qc, Canada); poly-L-lysine from Peptides International (Louisville, KY, USA). Recombinant human cytokines were from R&D Systems (Minneapolis, MN, USA. Dimethyl sulfoxide (DMSO), N-formyl-methionyl-phenylalanine (fMLF), and phenylmethanesulphonyl fluoride (PMSF) were from Sigma-Aldrich (St. Louis, MO, USA). All inhibitors were purchased through Cedarlane Labs (Missisauga, Canada). ProLong Gold Antifade, Hoechst 33342, propidium iodide, and 16% paraformaldehyde (PFA) were purchased from Thermo Fisher (Missisauga, Canada). PlaNET reagents (fluorescent chromatin-binding polymers) are no longer available from Immune Biosolutions or other suppliers; we therefore employed a close equivalent – fluorescent, 50-nm carboxylate microspheres (# 16661-10) from Polysciences Inc. (Warrington, PA, USA). These microspheres are referred to as PlaNET reagents throughout this study. All other reagents were of the highest available grade, and all buffers and solutions were prepared using pyrogen-free clinical grade water.
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8

FLAG-tagged 5-HT2A Receptor Constructs

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A full-length human 5-HT2AR was subcloned into pcDNA3.1, and a FLAG sequence (DYKDDDDK) was introduced at the N-terminus using the inverse PCR system (Toyobo biotech, Osaka, Japan). Mutant constructs were made by site-directed mutagenesis using the QuikChange mutagenesis kit (Agilent Technologies, Santa Clara, CA, USA). The sequences of all constructs were verified by DNA sequencing. The FreeStyle HEK 293-F cells (Thermo Fisher, Waltham, MA, USA) were grown under suspension culture in FreeStyle 293 Expression Medium (Thermo Fisher) at 37 °C under 5% CO2. Cells were transfected using a mixture at a ratio of one μg plasmid DNA: polyethyleneimine MAX (Polysciences, Warrington, PA, USA) = 1:3 (weight) into 1 mL of cells at a density of 2 × 106 cells/mL. The next day after transfection, the cells were inoculated on the surface of the 12.5 μm thick polyimide films (Kapton, Du Pont-Toray) that were treated with 0.001% poly L-lysine (Peptide institute, Osaka, Japan) at a density of 1 × 106 cells/cm2 and further cultured for 12 h. The viability of cells was examined by trypan blue dye exclusion.
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