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Ripa lysis buffer

Manufactured by Santa Cruz Biotechnology
Sourced in United States, Germany, France

RIPA lysis buffer is a detergent-based buffer used for the extraction and solubilization of proteins from cells and tissues. It contains a combination of ionic and non-ionic detergents, as well as other reagents, to facilitate the effective lysis and extraction of proteins from a wide range of sample types.

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432 protocols using ripa lysis buffer

1

Protein Extraction from Extracellular Vesicles

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Proteins were concentrated from the fraction eight of EVs obtained from plasma of patients and from supernatant of cell lines. Then total proteins were extracted, keeping samples on ice, with 1X RIPA lysis buffer (Santa Cruz Biotechnology, United States) with the addition of 10 µL of PMSF, 10 µL of sodium orthovanadate and 15 µL of protease inhibitors per ml of 1X RIPA lysis buffer, as recommended by the manufacturer’s protocol. The lysates were centrifuged at 4°C at 13,000 × g for 30 min. Then, the supernatant was transferred to another tube. Proteins were subsequently quantified following the protocol of the BCA Protein Assay (Pierce, Thermo Fisher Scientific, United States) and using a Multiscan EX microplate reader (Thermo Fisher Scientific, United States), with a wavelength filter of 490 nm.
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2

Optimizing RNA and Protein Extraction

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RNA was isolated from BC cells with mirVanaTM miRNA Isolation Kit (Invitrogen, Thermo Fisher Scientific, United States), following the manufacturer’s instruction. RNA isolation from 2-to-4 10 μm thick slices FFPE was performed by using RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Invitrogen, Thermo Fisher Scientific, United States) following the protocol provided by the manufacturer. The quantification of extracted RNA was carried out using NanoDrop ND-1,000 (Thermo Fisher Scientific, United States). Total proteins were extracted, keeping samples on ice, with 1X RIPA lysis buffer (Santa Cruz Biotechnology, United States) with the addition of 10 μl of PMSF, 10 μl of sodium orthovanadate and 15 μl of protease inhibitors per ml of 1X RIPA lysis buffer, as recommended by the datasheet. The lysates were centrifuged at 4°C for 30 min. Then, supernatant was transferred to another tube. Proteins were quantified through BCA Protein Assay (Pierce, Thermo Fisher Scientific, United States), and using a Multiscan EX microplate reader (Thermo Fisher Scientific, United States), at a wavelength of 490 nm.
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3

Protein Expression Analysis of NPC Cells

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NPC cells with indicated transfection were lysed in radio-immunoprecipitation assay (RIPA) lysis buffer (Santa Cruz, Dallas, TX, USA) for half an hour on ice. Excised xenograft tumors were homogenized and lysed in RIPA lysis buffer (Santa Cruz) for 1 hon ice. The supernatants were harvested after centrifugation at 10,000 g for 15 min. Protein was quantified with BCA assay kit (Thermo Fisher Scientific). Thirty micrograms of protein was loaded, electrophoresed, and transferred to polyvinylidene fluoride (PVDF) membrane (Bio-Rad, Hercules, CA, USA). Membranes were then blocked in 5% bovine serum albumin (BSA) solution for 1 h. After wash, membranes were incubated with primary antibodies against E-cadherin (1:1000, Abcam), N-cadherin (1:1000, Abcam), Snail (1:500, Abcam), c-Myc (1:500, Abcam), Cyclin D1 (1:2000, Abcam), Survivin (1:1000, Abcam), MET (1:1000, Abcam), phosphorylated MET (1:1000, Abcam), eIF4G1 (1:500, Abcam), phosphorylated eIF4G1 (1:500, Abcam) and GAPDH (1:4000, Abcam) at 4 °C overnight respectively. On the second day, membranes were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies for 1 h, which was visualized using enhanced chemiluminescence (ECL) substrates (Bio-Rad). Band intensity was quantified with ImageJ software. GAPDH was used as a normalization control.
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4

Evaluation of Prostate Cancer Molecular Markers

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For the in vitro study, LNCaP cells were treated with EGCG (20 µM) + Q (2.5 µM), Arc (1 µM), EGCG+Q+Arc, or the control; WPE1-NA22 cells were treated with EGCG (20 µM) + Q (2.5 µM), Arc (0.5 µM), EGCG+Q+Arc, or the control, for 24 h. The cells were harvested and total protein was extracted using an RIPA lysis buffer (Santa Cruz, CA, USA). For the animal study, total protein was extracted from the prostate/tumor tissues using the RIPA lysis buffer (Santa Cruz). The procedure for the Western blot analysis was described previously [38 (link)]. Briefly, 50 μg of protein was separated on a 4–12% Bis-Tris gel (Invitrogen), electrotransferred to nitrocellulose membranes, and blocked in 5% nonfat milk. The membranes were incubated with primary antibodies for the detection of AR (sc-7305, 1:500 dilution), PTEN (sc-7974, 1:500 dilution) (Santa Cruz Technology, Santa Cruz, CA, USA), Akt (4685, 1:1000 dilution), and p-Akt (4058, 1:1000 dilution) (Cell Signaling Technology, Danvers, MA, USA), respectively. GAPDH was used as a loading control.
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5

TRPV1 Expression in Neuropathic Pain

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The rats were deeply anesthetized with pentobarbital (60 mg/kg, i.p.) on days 0, 7, or 14 after the start of PTX (4 mg/kg) treatment, and spinal cords were removed for Western blot analysis. Spinal cords were homogenized in cold 1× RIPA lysis buffer (Santa Cruz Biotechnology, Santa Cruz, CA, USA) containing phosphatase inhibitor cocktail (EDTA free) (Nacalai Tesque, Inc. Tokyo. Japan) and protease inhibitor cocktail (Nacalai Tesque). The homogenates were centrifuged at 4 °C for 30 min at 15,000× g, and the supernatants were collected. Spinal cord protein (30 μg) was separated by an SDS-polyacrylamide gel (7.5%) and transferred onto polyvinylidene difluoride membranes. Anti-TRPV1 antibody (1:200, Alomone Labs, Jerusalem, Israel) was used for Western blotting, with anti-β-actin (Sigma-Aldrich, 1:1000) used as the internal control. Horseradish peroxidase-labeled goat anti-rabbit immunoglobulin G (IgG) (Santa Cruz Biotechnology, 1:5000) was used as the secondary antibody. Specific bands were detected by enhanced chemiluminescence (ECL) with the ECLTM Prime Western Blotting Detection kit (GE Healthcare, Wauwatosa, WI, USA) using a luminescent image analyzer LAS4000 (Fuji Film, Japan). The intensities of immunoreactive bands were quantified using MultiGage Ver.3 software (Fuji Film, Tokyo, Japan).
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6

Immunoblotting Analysis of γ-globin Expression

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Whole cellular extracts were prepared from CD34+-derived erythroblasts as described.21 (link) Briefly, cells (5–10 × 106 cells) were suspended with 1 × RIPA lysis buffer (Santa Cruz Biotechnology, Santa Cruz, CA, USA) supplemented with 1 mM phenyl-methyl sulfonyl fluoride, 100 mM sodium orthovanadate, and protease inhibitor cocktail. Whole cellular extracts were obtained by centrifugation at 14,000× g for 15 minutes. Immunoblotting was performed as described previously.22 (link) Approximately 2–3 micrograms of cellular extracts were separated on 12% SDS polyacrylamide gels and transferred to nitrocellulose membranes (Invitrogen, Carlsbad, CA, USA). All antibodies used for immunoblotting analyses were purchased from Santa Cruz Biotechnology unless otherwise stated. Protein bands were visualized by the Phototope HRP Western blot detection system (Cell Signaling Technology, Danvers, MA, USA) according to the protocol provided by the supplier. Immunoblotting for γ-globin expression was performed by using serum preparations with no visible hemolysis that were isolated from multiple SCD patients.
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7

Quantifying MCM2 Protein in MEF Cells

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Pellets of mouse embryonic fibroblasts (MEF) were lysed using RIPA Lysis Buffer (ChemCruz), containing phenylmethylsulfonyl fluoride, protease inhibitor, and sodium orthovanadate. The protein concentration was calculated using Micro BCA Protein Assay Kit (Thermo Fisher Scientific), and samples were prepared with Laemmli Sample Buffer (Bio-Rad). Twenty μg of protein were size-fractinated on 10% SDS-PAGE gels and transferred to nitrocellulose membrane (Thermo Fisher Scientific). After blocking membranes using 5% non-fat dry milk (Bio-Rad) in TBS with 0.1% Tween-20, immunoblotting was performed using the following primary and specific horseradish peroxidase (HRP)-conjugated antibodies and the manufacturer’s recommended concentration: MCM2 (Clone-EPR4120; Abcam), β-Actin (Clone-AC-15; Sigma), and Anti-rabbit/mouse IgG HRP-linked Antibody (Cat#7074/#7076; Cell Signaling). MCM2 protein was quantified by ImageJ software (US National Institutes of Health) 21 (link) and normalized against β-Actin.
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8

Luteolin Attenuates TNFα-Induced Response

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3T3-L1 adipocytes were pretreated with different concentration of luteolin for 24 h then stimulated with TNFα for 30 min. Cells were harvested and washed with ice-cold phosphate-buffered saline (PBS) for two times. The pellet was resuspended with 30 μl of RIPA lysis buffer (Chem Cruz) for whole cell lysate and then incubated for 40 min in ice. Then it was centrifuged to 12,000 rpm for 20 min at 4°C and then after supernatant was collected and stored at − 80°C. For nuclear extract, after washing cell pellet with PBS, cytoplasmic buffer (10 mM HEPES, pH 7.9, 10 mM KCl, 0.1 mM EDTA, 1 mM DTT and protease inhibitor) was added and incubated for 10 min. Then 10 μl of 10% NP-40 was mixed and vertex vigorously, followed by centrifugation at 6,000 rpm at 4°C for 4 min to pellet nuclei. Then the pellet was suspended with nuclear buffer containing 20 mM HEPES (pH 7.9), 0.4 M NaCl, 1 mM EDTA, 1 mM DTT and protease inhibitors. After incubation on ice for 15 min, nuclear protein was separated by centrifugation at 14,000 rpm for 5 min at 4°C and stored at −80°C.
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9

Western Blot Analysis of ASIC2a in Placental and Hippocampal Tissues

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Placental and hippocampal tissues from sham and RUPP mice were homogenized using ChemCruz RIPA lysis buffer in a mini bead homogenizer at 4000 rpm. The supernatant for each sample was collected. A bicinchoninic acid (BCA) protein assay was used to determine the amount of protein in each sample. Samples were prepared for Western blot analysis using 1x PBS, 4X sample buffer which contained 2 beta-mercaptoethanol. Samples were electrophoresed through Criterion TGX 4–20% Stain-free gel at 120 V for 90 min. When completed, the gel was activated using the ChemiDoc MP Imaging System for 45 s. The proteins were transferred to nitrocellulose membranes using the Trans blot turbo transfer kit. Following 30 min of blocking in Odyssey blocking buffer, the primary antibodies for the proteins of interest (ASIC2a antibody, 1:1000, Thermo Fisher Scientific, catalog# OSR00097W) and alpha-tubulin antibody (1:15,000, Abcam, catalog# ab89984) were added and incubated overnight. After washing, the secondary antibodies, donkey anti rabbit (1:15,000, Li-Cor, Catalog# 131591), and donkey anti chicken (1:15,000, Li-Cor, Catalog# 925-68028) were added. Membranes were imaged using the Chemidoc MP system. Protein expression was normalized to alpha tubulin expression. Blots were analyzed using the Bio-Rad Chemidoc Image Lab software.
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10

Protein Extraction and Western Blot

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Cell protein extraction and western blot were conducted as described previously [30 (link), 35 (link)]. Protein was extracted from cells using 1x RIPA lysis buffer (Santa Cruz, Dallas, TX). Samples were electrophoresed and subjected to western blot using primary antibodies against RGS2 (Proteintech, Chicago, IL) and β-actin. IRDye-800 secondary antibodies (LI-COR, Lincoln, NE) were used to capture images with a LI-COR Odyssey.
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