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Columbia agar base

Manufactured by BD
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Columbia agar base is a general-purpose microbiological growth medium used for the cultivation and isolation of a wide range of bacterial species. It provides essential nutrients required for the growth of a variety of aerobic and anaerobic microorganisms.

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5 protocols using columbia agar base

1

Selective Agar Plates for Bacterial Isolation

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We used plates containing Columbia agar base (Becton Dickinson Norway AS) supplemented with 15 mg/L NAD (BioNor Laboratories AS, Norway) and 15 mg/L hemin (Sigma Aldrich Norway AS), as well as chocolate agar plates (Oxoid).
Selective agar plates were Columbia agar plates containing rifampicin (10 mg/L) (rif plates) and rifampicin (10 mg/L) + azithromycin (30 mg/L) (rif+azm plates). The plates were incubated at 35°C, 5% CO2 for 24 or 48 h before colony counting.
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2

Isolating and Identifying Streptococcus Species

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The pure stock isolates were stored in Todd-Hewitt broth (THB; Difco, Sparks, MD, USA) at −80 °C. All isolates were cultured aerobically on Todd Hewitt agar (THA; Difco, Sparks, MD, USA), and on 5% sheep blood agar (Columbia agar base; Becton Dickinson, Cockeysville, MD, USA), and then incubated at 37 °C for 24 h. Genomic DNA was extracted from cultivated strains using a DNAzol® reagent (Invitrogen, Carlsbad, USA) [37] (link). The fish SDSD isolates were discriminated from pig SDSE isolates by using sodA gene primers specific for fish SDSD detection. PCR was performed as described previously [37] (link).
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3

Casein Hydrolysis and SpeB Detection in GAS

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Skim-milk agar was prepared by Columbia agar base (Becton, Dickinson and Company, Sparks, MD, USA) supplemented with 3% skim milk. GAS strains were sub-cultured on the Skim-milk agar and incubated at 5% CO2, 37°C incubator for 12-16 h. Casein hydrolysis by GAS strains results in the appearance of a clear zone around bacterial colonies. For Western blot analysis, 30 μl of GAS culture supernatant was subjected to 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by transfer to the polyvinylidene difluoride membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% skim milk in PBST buffer (PBS containing 0.2% of tween-20) at 37°C for 1 h, and SpeB protein was detected by the anti-SpeB antibody (Toxin Technology, Inc., Sarasota, FL, USA) according to the manual. After hybridization, the membrane was washed with PBST and hybridized with the secondary antibody, peroxidase conjugated goat anti-rabbit IgG (1:10,000 dilution; Cell Signaling Technology, Inc., Danvers, MA, USA) at room temperature for 1 h. The blot was developed using Pierce ECL Western Blotting Substrate (Thermo Fisher Scientific Inc., Rockford, IL, USA) and the signal was detected by the Gel Doc XR+ system (BioRad).
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4

Cultivation and Protein Extraction of H. pylori

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The H. pylori type strain, J99 strain ATCC 700824, was used in this study and was stored at −80 °C. The H. pylori strain was inoculated onto Columbia blood agar plates, which consisted of 39 g of Columbia Agar Base (CM0331, Becton Dickinson, Franklin Lakes, NJ, USA) per liter, 7% hemolyzed horse blood (SR0048) and supplemented with one vial of Dent (SR0147, Oxoid, Hampshire, UK). For growing visible colonies, plates were kept in a Gaspack (BD GasPak EZ products, Franklin Lakes, NJ, USA) at 37 °C from 3 to 10 days until colonies were observed. From the primary growth, single colonies were propagated in blood agar for an additional 48 h, harvested in phosphate-buffered saline (PBS) and inoculated into Hams F12 media supplemented with 5% horse serum and incubated in 5% CO2 incubator. Bacterial protein extraction was conducted using B-PER extraction reagents based on manufacturer's protocols (Thermo Scientific, Rockford, IL, USA).
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5

Cultivation of H. pylori J99 Strain

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The H. pylori J99 strain (ATCC 700824) is a human isolate that was used in the cell culture experiments due to its ability to strongly infect human cell lines. The H. pylori strain was inoculated onto Columbia blood agar plates, which consisted of 39 g of Columbia Agar Base (CM0331, Becton Dickinson, Franklin Lakes, NJ, USA) per liter and 7% hemolyzed horse blood (SR0048), supplemented with one vial of Dent (SR0147, Oxoid, Hampshire, UK). For growing visible colonies, plates were kept in a Gaspack (BD GasPak EZ products, Franklin Lakes, NJ, USA) at 37 °C for 3 to 10 days until colonies were observed. From the primary growth, single colonies were propagated in blood agar for an additional 48 h, harvested in phosphate-buffered saline (PBS) and inoculated into Hams F12 media supplemented with 5% horse serum and incubated in 5% CO2 incubator.
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