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9 protocols using p smad3 ser423 425

1

Metformin and Phenformin Regulate TGF-β Signaling

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Metformin and phenformin were purchased from Sigma-Aldrich (St. Louis, MO, USA); human TGF-β1 and antibodies against β-actin, p-AMPKα Thr172, AMPKα, p-ACC Ser79, ACC, Slug, p-Smad3 Ser423/425, and Smad2/3 were from Cell Signaling Technology (Beverly, MA, USA); ELISA kits for human and mouse TGF-β1, antibodies against E-cadherin, and vimentin were from Abcam (Cambridge, MA, USA); monoclonal antibody against LKB1 was from Santa Cruz Biotechnology (Santa Cruz, CA, USA); growth factor-reduced Matrigel and monoclonal antibody against β-catenin were from BD Biosciences (San Jose, CA, USA); Lipofectamine 2000, 4′,6-diamidino-2-phenylindole (DAPI), fluorescein isothiocyanate (FITC)-conjugated donkey anti-rabbit antibodies were from Life Technologies (Grand Island, NE, USA); Chamber slides was from EMD Millipore (Billerica, MA, USA).
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2

Western Blot Analysis of PI3K/AKT Pathway

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Whole head and neck tissues and tumors tissues were lysed using a homogenizer (Pro Scientific) in lysis buffer (Roche) containing a pellet of protease inhibitor cocktail. Protein concentration was measured using Pierce 660 nm protein assay reagent (Thermo), and 40 μg of protein lysates were analyzed using the standard Western protocol we have described previously.37 (link) Blots were incubated with primary antibodies at 4°C overnight and secondary antibodies for 1 hour at room temperature. Western blots were imaged by ECL (Biorad) and normalized with respect to GAPDH (Cell Signaling, #5174) expression. The primary antibodies were as follows and purchased from Cell Signaling: p110α (#4255), PDK1 (#3438), pPDK1Ser241 (#3061), pAKTSer473 (#4058), pAKTThr308 (#9275), AKT1 (#2938), AKT2 (#4057), pSmad2 ser465/467 (#3101), and pSmad3ser423/425 (#9520). TGFβ1 ELISA was performed as described previously using the R&D systems kit.18 (link)
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3

Nuclear and Cytoplasmic Protein Extraction

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The NE-PER™ Nuclear and Cytoplasmic Extraction Reagents kit (ThermoFisher, United States) was utilized to extract nuclear and cytosolic protein fractions (Cao et al., 2004 (link)). GAPDH and TFIIA-α were used to control equal loading of cytoplasmic and nuclear fractions, respectively. For immunoblotting, the corresponding proteins were electrophoresed on 10% SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were blocked with 5% dry milk in PBS-Tween buffer (0.1% Tween 20; pH7.5) for 60 min and incubated with primary antibodies to TGF-β1 (Santa Cruz, CA, United States), Smad3, and p-Smad3 (Ser423/425) (Cell Signaling Technology, Beverly, MA, United States), respectively, for 3 h at room temperature. After five washes with TBST and two washes with TBS, the membrane was incubated for 1 h at room temperature with horseradish peroxidase-conjugated secondary antibody (Abcam). Following another two washes with TBST, labeled proteins were visualized using ECL (Invitrogen, Carlsbad, CA) on high-performance chemiluminescence film. The intensity of the bands was quantified by densitometry with image analysis software. Smad3 nucleus translocation was determined as the percentage of protein content in the nucleus versus cytoplasm.
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4

Immunoblotting Analysis of TGF-β Signaling Proteins

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Total protein was extracted from NFPAs or normal pituitaries using lysis buffer (Applygen, Beijing, China) following the manufacturer’s instructions. The protein concentration was measured using the bicinchoninic acid method. Protein samples (30 μg) were separated by electrophoresis using 10% sodium dodecyl sulfate polyacrylamide gels, and then transferred to polyvinylidene difluoride membranes. The membranes were blocked with 5% bovine serum albumin in Tris-buffered saline containing 0.1% Tween 20, and incubated with rabbit antibodies against human Smad2 (1:1000; Cell Signaling Technology, Boston, MA, USA), p-Smad2 (Ser465/467) (1:1000; Cell Signaling Technology, Boston, MA, USA), Smad3 (1:1000; Cell Signaling Technology, Boston, MA, USA), p-Smad3 (Ser423/425) (1:1000; Cell Signaling Technology, Boston, MA, USA), and GAPDH (1:5000; Sigma-Aldrich, St. Louis, MO, USA). Subsequently, the membranes were incubated with the secondary antibody anti-rabbit IgG (1:4000; Jackson ImmunoResearch Laboratories, West Grove, PA, USA). Finally, the membranes were developed using an ultrasensitive chemiluminescence protein dye detection system (ECL Plus; Amersham Pharmacia Biotech, Piscataway, NJ, USA) and exposed to X-ray films (Kodak, Rochester, NY, USA). The bands were subjected to grayscale scanning and semi-quantitative analysis using Quantity One software (Bio-Rad, Hercules, CA, USA).
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5

Western Blot Analysis of Muscle Protein Signaling

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Protein extracts from the tibialis anterior and soleus muscles of wild-type and VDR−/− mice were obtained by homogenizing muscles in lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM EDTA, 1% NP40, 0.5% sodium deoxycholate, 0.1% SDS) containing phosphatase inhibitors (10 mM Na3VO4, 100 mM NaF) and protease inhibitors (Roche). The proteins were resolved by SDS-PAGE (8%) and transferred onto nitrocellulose membranes. The membranes were incubated with primary antibodies followed by incubation with HRP-conjugated anti-mouse or anti-rabbit secondary antibodies and visualized using Supersignal West Pico Chemiluminescent Substrate (Thermo Scientific, Rockford, IL, USA). Blots were probed with antibodies against p-Stat3 (clone # B-7, cat # sc-8059, Santa Cruz Biotechnology), p-rpS6 (clone # 91B2, cat # 4857), S6 ribosomal protein (clone # 5G10, cat # 2217), p-p70S6 kinase (Thre389, #9205, Cell Signaling Technology, Beverly, MA), p70S6 kinase (#9202s, Cell Signaling Technology, Beverly, MA), p-Stat5 (Clone C11C5, cat # 9359), Stat5 (cat # 9363), Stat3 (cat # 4904), IL-6 (cat # 12912, Cell Signaling Technology, Beverly, MA), p-Smad3 (Ser423/425) (C25A9, #9520, Cell Signaling Technology, Beverly, MA), slow myosin (NOQ 7.5.4D, cat # M8421, Sigma-Aldrich), Myogenin (F5D, #ab1835 Abcam), GAPDH, and β-actin (cat # sc-47724 and # sc-47778, respectively, Santa Cruz Biotechnology).
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6

Western Blot Analysis of PI3K/AKT Pathway

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Whole head and neck tissues and tumors tissues were lysed using a homogenizer (Pro Scientific) in lysis buffer (Roche) containing a pellet of protease inhibitor cocktail. Protein concentration was measured using Pierce 660 nm protein assay reagent (Thermo), and 40 μg of protein lysates were analyzed using the standard Western protocol we have described previously.37 (link) Blots were incubated with primary antibodies at 4°C overnight and secondary antibodies for 1 hour at room temperature. Western blots were imaged by ECL (Biorad) and normalized with respect to GAPDH (Cell Signaling, #5174) expression. The primary antibodies were as follows and purchased from Cell Signaling: p110α (#4255), PDK1 (#3438), pPDK1Ser241 (#3061), pAKTSer473 (#4058), pAKTThr308 (#9275), AKT1 (#2938), AKT2 (#4057), pSmad2 ser465/467 (#3101), and pSmad3ser423/425 (#9520). TGFβ1 ELISA was performed as described previously using the R&D systems kit.18 (link)
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7

Investigating Cellular Signaling Pathways with Targeted Protein Modulation

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Human recombinant TGF-β1, PDGF and BMP4 were purchased from Biolegend (San Diego, CA). Fast-start universal SYBR Green master mix was from Roche, and sb431542, MG132 and chloroquine were from Sigma. The antibodies used for immunoblotting (IB): GAPDH 1:10000 (Sigma), β-actin 1:5000 (Santa Cruz),Smad2 1:1000 (Cell Signalling), Smad3 1:1000 (Cell Signalling), p-Smad2 (Ser465/467) 1:1000 (Cell Signalling), p-Smad3 (Ser423/425) 1:500 (Cell Signalling), IDH1 1:1000 (Origene), SP1 1:1000 (Sigma), α-tubulin 1:1000 (Santa Cruz), p-p38 1:1000 (Cell Signalling), p38 1:1000 (Cell Signalling), p-Erk1/2 1:2000 (Cell Signalling), Erk1/2 1:1000 (Cell Signalling), S100A4/FSP1 1:500 (Abnova), TGFBRI 1:1000 (Cell Signalling), TGFBRII 1:1000 (Abcam), p-TGFBRI 1:200 (Abcam), Cav1 1:1000 (ProteinTech), FKBP12 1:1000 (ProteinTech), and SARA 1:1000 (ProteinTech).
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8

Protein Extraction and Western Blot Analysis

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Tissue or cell proteins were prepared according to published protocols (Liao et al., 2015 (link); Yuan et al., 2016 (link)). Briefly, mouse heart tissue or NRCMs were lysed in RIPA lysis buffer for total protein extraction. BCA Protein Assay Kit was used for quantifying protein concentration. Proteins (50 μg/sample) from different samples were used for SDS-PAGE electrophoresis and subsequently transferred to PVDF membrane (Millipore). After blocking with 5% BSA for 1 h, blots were then incubated with primary antibodies overnight at 4°C. The next day, these blots were incubated with secondary antibody conjugated with peroxidase (1:10,000, the Jackson Laboratory) for 1 h at room temperature. All blots were visualized using ChemiDocTM XRS+ (Bio-Rad). The bands were quantified and analyzed using Image-Pro Plus 6.0. The expression of specific proteins was normalized to corresponding GAPDH before relative quantitative analysis. The primary antibodies used in this study were purchased from Cell Signaling Technology (CST): GAPDH (#2118, 1:1,000), p-ERK1/2Thr202/Tyr204 (#4370, 1:1,000), T-ERK1/2 (# 4695, 1:1,000), p-p38Thr180/Tyr182 (#4511, 1:1,000), T-p38 (#9212, 1:1,000), p-JNKThr183/Tyr185 (#4668, 1:500), T-JNK (#9258, 1:1,000), RIP2 (#4142, 1:1,000), p-TAK1Thr184/187 (#4508, 1:500), T-TAK1 (#5206, 1:500), TGF-β, p-smad3ser423/425 (#8769, 1:500), and T-smad3 (#9513, 1:1,000).
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9

Gastric Tissue Microarray Analysis

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The gastric tissue micro‐array (TMA) was purchased from Shanghai Outdo Biotech Co. HRP‐conjugated secondary antibody and DAB kit was from ZSbio. Phenylmethylsulfonyl fluoride (PMSF), pepstatin A, metformin and berberine were from Sigma‐Aldrich. Aprotinin and Leupeptin were from GLPBio. EDTA and EGTA were from Solarbio. Human recombinant TGF‐β1 and monoclonal primary antibodies against β‐actin, p‐AMPKα Thr172, AMPKα, p‐Smad3 Ser423/425 and Smad3 were from Cell Signalling Technology. Monoclonal antibody against TGF‐β1 was from Abcam, and monoclonal antibody against LKB1 from Santa Cruz Biotechnology. Lipofectamine3000 was from Thermo Fisher Scientific Inc. FITC‐conjugated donkey anti‐rabbit antibody was from Life Technologies. RNAsimple Total RNA kit was from TIANGENE BioTec. Dual luciferase assay kit was from Promega Corporation. Restriction enzymes XhoI and HindIII and T4 ligase were from New England Biolabs. TGF‐β1 ELISA kit was purchased from Merck.
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