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8 protocols using heparin

1

Transvaginal Ultrasound-Guided Oocyte Retrieval

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Transvaginal ultrasound ovum pick up (OPU) was performed as previously reported [14 (link), 16 (link)]. Briefly, an Aloka real-time B-mode ultrasound system (Aloka SSD-4000, Hitachi Aloka Medical Ltd., Tokyo, Japan) and a 7.5 MHz electronic convex transducer (Hitachi Aloka Medical Ltd., Tokyo, Japan) were used to visualize the ovaries (S1 Fig). Visible follicles ≥ 3 mm in diameter were punctured using a disposable 20G x 2 ¾” needle (0.9 x 70 mm, Terumo, Eschborn, Germany). A vacuum pump (Aspirator 3, Labotect GmbH, Göttingen, Germany), adjusted to a negative pressure of 60 mmHg (20 ml/min) was used to recover follicular fluid. After puncture of four to five follicles, the oocyte collection system was flushed with Dulbecco’s PBS medium (AppliChem, Darmstadt, Germany), supplemented with 2.2 IU/ml heparin (AppliChem), 1% newborn calf serum (NBCS; PPA Laboratories, Coelbe, Germany), 6 μg/ml penicillin G (AppliChem) and 50 μg/ml streptomycin sulphate (AppliChem) for the standard protocol (TCM24) or additionally supplemented with 3-isobutyl-1-methylxanthine (IBMX, 500 μM, Sigma-Aldrich) for the protocol using the cAMP regulators (cAMP30) and dimethyl sulfoxide (DMSO, 46.6 mM, Sigma-Aldrich) as vehicle control (DMSO30). The vehicle control was necessary because IBMX was dissolved in DMSO. The interval from ovum pick up to oocyte searching did not exceed 20 min.
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2

Flow Cytometric Analysis of Heparan Sulfate

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Scube2-transfected Bosc23 cells and CHO-K1 and CHO-pgsD677 cells were non-enzymatically removed from the culture dish by using Versene (PAA) and suspended in PBS containing 5% FCS in a total volume of 0.5 ml. Cells were incubated with heparinases I to III (AMS Biotechnology) at 37 °C or with 10 μg/ml heparin (AppliChem) at 4 °C for 1 h. Cells were washed and treated with α-FLAG antibody (1:500 dilution) for 1 h and fluorescein isothiocyanate-conjugated goat-α-rabbit secondary antibody (1:200 dilution, Dianova) for 30 min on ice. FACS analysis was performed on a BD Accuri C6 flow cytometer (BD Biosciences). Histograms were created by using FlowJo single cell analysis software.
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3

Mouse Liver Decellularization Protocol

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Mice were anesthetized by intaperitoneal injection of diazepam and hypnorm (1:1, 200 μl). Hepatic portal vein was cannulated and liver perfusion was carried out at 37 °C and at the speed of 5 ml/min. Mouse liver was perfused sequentially with heparinized phosphate buffered saline (PBS) (12.5 U heparin/ml, AppliChem, Darmstadt, Germany) for 10 min, 1% SDS and 1% Triton X-100 for 2 h each followed by perfusion with water for 30 min and PBS for 2 h. To evaluate the decellularization efficiency fresh mouse liver and decellularized liver samples were minced. DNA content was quantified after proteinase K digestion using a NanoDrop 2000 spectrophotometer (Thermo Scientific, Wilmington, DE). All decellularized liver samples contained less than 200 ng/mg DNA.
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4

Cultivation of Endothelial Cell Lines

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p19ARF-/- and wt mLSECs were cultivated on collagen-coated (Collagen Type I-Rat Tail, BD Biosciences, USA, Cat.#354236) Petri dishes in DMEM (Dulbecco´s Modified Eagle´s Medium) containing 100 μg/ml Endothelial Cell Growth Supplement (ECGS, Biomedical Technologies, USA, Cat.#BT203), 0.2 μg/ml hydrocortisone (Alfa/Aesar, Germany, Cat.#A16292) and 50 μg/ml heparin (AppliChem, Germany, #3U009511). Human hepatic sinusoidal endothelial cells (hHSECs) (ScienCell, USA, Cat#5000) were cultivated in Endothelial Cell Medium (ECM) (ScienCell, USA, Cat. #1001) following the manufacturer’s instruction. Human telomerase reverse transcriptase (TERT)-immortalized blood endothelial cells (BECs; [27 (link)] were cultivated on collagen-coated plates in ECM. MIM1-4 cells were cultivated as described previously [25 (link)]. All cell lines were cultured at 37°C and 5% CO2 and routinely screened for the absence of mycoplasma.
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5

Virus Entry Mechanisms Across Cell Lines

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CHO-K1 and glycosaminoglycan (GAG)-deficient pgsA-745 cells seeded in 12-well plates were infected with virus at an MOI of 0.0001 in PBSA for 1 h at room temperature. Cell monolayers then were washed twice with PBS and overlaid with an agarose–GMEM overlay supplemented with 2% FCS. After 3 days at 37°C, cells were fixed and titers calculated as described for other plaque assays.
To remove heparan sulfate from the surface of BHK-21 cells, cells were seeded in 12-well plates and then incubated with 0.5 U/ml of heparinase I (Sigma) or BSA as a control for 30 min at room temperature with constant agitation. Subsequently, the mixture was replaced with virus in PBSA and incubated for a further 30 min at room temperature with constant agitation. Monolayers then were washed twice with PBS and overlaid with an agarose–GMEM overlay supplemented with 2% FCS. After 2 days at 37°C, cells were fixed and titers determined as described for plaque assays.
For heparin competition assays, virus was incubated with 200 μg/ml of heparin (AppliChem) or BSA as a control for 30 min on ice with constant rotation. BHK-21 cells were exposed to the virus-heparin mix for 30 min on ice, the inoculum was removed, the monolayers were washed twice with PBS, and an agarose–GMEM overlay supplemented with 2% FCS was added. After 2 days at 37°C, cells were fixed and titers determined as described for plaque assays.
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6

Fluorescently Labeled Murine Liver Cell Cultures

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The murine p19ARF-deficient, EMT-transformed MIM-RT hepatocytes expressing green fluorescent protein (GFP) were cultivated in RPMI 1640 plus 10% fetal calf serum (FCS) and continuously supplied with 1 ng/mL TGF-β1 (Peprotech, Rocky Hill, NJ, USA) as described previously [25 (link)]. The murine p19ARF-deficient liver sinusoidal endothelial cells, termed mLSECs, were propagated on collagen-coated (Collagen Type I-Rat Tail, BD Biosciences, San Jose, CA, USA, Cat.#354236) petri dishes in Dulbecco’s Modified Eagle’s Medium (DMEM) containing 100 µg/mL Endothelial Cell Growth Supplement (ECGS; Biomedical Technologies, Stoughton, MA, USA, Cat.#BT203), 0.2 µg/mL hydrocortisone (Alfa/Aesar, Karlsruhe, Germany, Cat.#A16292), and 50 µg/mL heparin (AppliChem, Darmstadt, Germany, #3U009511) as outlined recently [27 (link)]. For fluorescent labelling, mLSECs cells were lentivirally transmitted with a vector harbouring red fluorescent protein (RFP), resulting in mLSECs-R cells. Human umbilical vein endothelial cells (HUVECs) were grown in Endothelial Cell Medium (ECM; ScienCell, Carlsbad, CA, USA, Cat.#1001) following the manufacturer’s instruction. All cells were grown at 37 °C and 5% CO2, and were routinely screened for the absence of mycoplasma.
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7

Hemagglutination Inhibition Assay for Influenza Virus

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HAI assay was used to evaluate the effect of the compounds in virus adsorption to target cells. The compounds (25 µl) with two-fold serial dilution with Phosphate Buffered Saline (PBS) were mixed with an equal volume of seed influenza virus (400 HAU per 50 µl). After incubation at room temperature for 30 minutes, 50 µl of the solution was mixed with an equal volume of 1% chicken erythrocyte suspension and then was incubated at 4°C for 30 minutes. The highest dilution of the compounds that prevented HA is called the HAI titer. About 20 µg/ml of heparin (AppliChem, Germany) was used as a positive control.
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8

Virus Inhibition Assay in Eggs

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Virus cultivation inhibition assay was carried out by embryonated chicken egg inoculation. About 100 µl of tested compounds (12.5, 25, and 50 µg/ml) was incubated with 100 µl of seed virus (2.86 × 10 8 virus particles/ml) at 37°C for 30 minutes, and then, 100 µl of the mixture was inoculated into each embryonated chicken egg and incubated at 37°C for 4 days. The allantoic fluid was harvested and then was tested by HA assay (Brauer and Chen, 2015) (link). About 20 µg/ml of heparin (AppliChem, Germany) was used as a positive control. of 17-(tryptamine)-17-demethoxygeldanamycin (2) and17-(5′-methoxytryptamine) -17-demethoxygeldanamycin (3) from geldanamycin (1).
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