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19 protocols using anti ifn γ clone xmg1

1

Cytokine Production Profiling Assay

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Cells were stimulated phorbol 12-myristate-13-acetate (PMA) (81 nM) and ionomycin (1.3 μM) (Biolegend) for one hour at 37°C and 5% CO2 then monensin (2 μM) (Biolegend) was added without washing the cells for four additional hours. Cells were then washed with staining buffer, stained for surface receptors, then fixed for 20 minutes, and stained for intracellular cytokines in permeabilization buffer. The intracellular antibodies that were used were anti-TNF-α (clone MP6-XT22, Biolegend), anti-IL-6 (clone MP5-20F3, Biolegend), anti-IL-17A (clone TC11-18H10.1, Biolegend), anti-IFN-γ (clone XMG1.2, Biolegend), anti-IL-2 (clone JES6-5H4, Biolegend), anti-IL-4 (clone 11B11, Biolegend), and anti-IL-10 (clone JES5-16E3, Biolegend).
Stained cells were analyzed in the Oklahoma Medical Research Facility (OMRF) Flow Cytometry Core Facility on a BD LSRII or Celesta (BD Biosciences) and data was analyzed using FlowJo Software (Tree Star, Inc., Ashland, OR).
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2

Multiparametric Immune Phenotyping of Cells

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Single cell suspensions were treated with Zombie violet as per the manufacturers insert instructions (Biolegend). Following treatment with Fc block (1 μg/ml) (Biolegend), cells were stained with combinations of the following antibodies: CD69 (clone H1.2F3), CD44 (clone IM7), CD8α (clone 53–6.7), CD3e (clone 145– 2C11), CD3 (clone 17A2), CD11a (clone I21/7), CD45 (clone 30-F11), Thy1.2 (clone 53–2.1), CD4 (clone GK1.5), CD4 (clone RM 4–4), CD4 (clone RM 4–5), CD62L (clone MEL-14) (BioLegend). Intracellular cytokine staining was performed with anti-IFN-γ (clone XMG1.2) and anti-IL17A (clone TC11–18H10.1) antibodies (BioLegend). Data was acquired using a FACS Canto II flow cytometer (Becton Dickinson (BD)) or Attune NxT flow cytometer (ThermoFischer Scientific) and analyzed using FlowJo software (TreeStar, version 10). All gating stragies used are described in the supplementary data.
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3

Analyzing Intracellular Cytokine Profiles

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Freshly isolated LN cells from WT or SOCS3Tg mice were stimulated with PMA (50 ng/ml) and ionomycin (1 μM) (both from Sigma) for 4 hours in the presence of brefeldin A (eBioscience). Dead cells were excluded by counterstaining with Aqua Live/Dead (Invitrogen). Surface staining was performed prior to cell fixation and permeabilization using the Foxp3 Transcription Factor Staining Buffer kit (eBioscience). Intracellular IL-4 and IFNγ contents were assessed using anti-IL-4 (clone 11B11, eBioscience) and anti-IFNγ (clone XMG1.2, BioLegend) antibodies.
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4

Multiparameter Flow Cytometry Analysis

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The cell phenotypes were analyzed by FACS Aria II flow cytometer (BD Bioscience), and data were analyzed with the FlowJo V10.0.7 (FlowJo, OR, USA). Cells were collected and washed in PBS, then the single-cell suspensions were labeled with various fluorochrome-conjugated antibodies for 30 minutes within PBS containing 0.5% BSA on ice. The gating strategies for CD4+ central memory T cells, CD8+ central memory T cells, CD4+ effector memory T cells, Tfh cells were CD4+CD62L+CD44+, CD8+CD62L+CD44+, CD4+CD62L-CD44+, CD4+CXCR5+PD-1+, respectively. The following antibodies were used: anti-mouse CD4-AF700 (clone RM4-5, eBioscience), anti-mouse CD8a-BV510 (clone 53-6.7, BD Horizon), anti-mouse CD62L-PE (clone MEL-14, Biolegend), anti-mouse CD44-Percp/Cy5.5 (clone 1M7, Biolegend), anti-mouse CXCR5-APC (clone SPRCL5, eBioscience) and anti-mouse PD-1-PE/Cy7 (clone J43, eBioscience). For ICCS, mice splenocytes were collected and co-stimulated with anti-CD3 antibody and anti-CD28 antibody (Biolegend) for 1 hour at 37 °C, then Cells were incubated with 5 mg/mL brefeldin A (Topscience), 2 mM monensin (Topscience). Cells were then harvested, stained with indicated antibodies with a Fixation/Permeabilization Solution Kit (BD Bioscience). We used these antibodies to detect cytokine secretion of T cells: anti-IFN-γ (clone XMG1.2, Biolegend) and anti-IL-2 (clone JES6-5H4, Biolegend).
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5

Multiparametric Flow Cytometry Analysis

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Single-cell suspensions were stained with anti-CD45 (clone I3/2,3), anti-CD4 (clone RM4-5), anti-CD8 (clone 53-6.7), anti-CD49b (clone HMα2), anti-CD73 (clone TY/11.8), anti-PD-1 (clone 29F.1A12), anti-Nrp-1 (clone 3E12), anti-IL-10 (clone JES5-16e3), anti-Foxp3 (clone FJK-165), anti-granzyme B (clone QA16A02), and anti-IFN-γ clone XMG1.2) coupled to FITC, PE, PE-Cy7, PerCP, PerCP-Cy7, and APC (all from Biolegend, NJ, USA). For intracellular cytokine staining, cells were stimulated for 5 h at 37°C adding PMA (50 ng/ml) (Sigma, Milano, Italy), ionomycin (1 mg/ml) (Sigma, Milano, Italy), and Brefeldin A (10 mg/ml) (eBioscience, CA, USA). Then, cells were fixed using a permeabilization kit (Biolegend or BD, USA) according to the manufacturer’s procedure and subsequently stained for intracellular markers. Flow cytometric data were acquired using FACS CantoII (BD Immunocytometry System, San Jose, USA) and analyzed with FlowJo software (Tree Star, OH, USA).
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6

In vitro T cell differentiation

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Naïve CD4+ T cells collected from pooled spleen and lymph nodes were cultured in round-bottom 96-well plates at 1×105 cells/well. Plates were pre-coated overnight with anti-CD3ε (BD, clone 2C11), and washed with PBS before adding media and cells. All cells were cultured in IMDM media supplemented with 10% FCS (Gibco), Pen/Strep and 2 μM freshly added β-mercaptoethanol. For Th17 differentiation, this media was supplemented to achieve the following final concentrations: 1 μg/ml soluble anti-CD28 (clone 37.51, BD Pharmingen), 10 μg/ml anti-IFNγ (clone XMG1.2, BioLegend) and anti-IL-4 (clone 11B11, BioLegend), 1 ng/ml hTGFβ (Miltenyi), and 20 ng/ml rmIL-6 (Miltenyi). For Th1 polarization, the media contained instead 1 μg/ml soluble anti-CD28 (clone 37.51, BD Pharmingen), 10 μg/ml anti-IL-4 (clone 11B11, BioLegend), 1 ng/ml rmIL-2 and 10 ng/ml rmIL-12 (Miltenyi Biotec). PGE2 was obtained from Cayman chemical and stored and diluted according to manufacturer’s instructions.
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7

Mouse Immune Cell Analysis

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Fluorochrome conjugated antibodies specific for mouse, anti-CD3 (clone: 145-2C11), anti-CD4 (clone: RM4-5), anti-Foxp3 (clone: MF-14), anti-IFNγ (clone: XMG1.2) and anti-IL-17A (clone: TC11-18H10.1) were all purchased from Biolegend, San Diego, CA, USA. Anti-CD8 (clone: 53–6.7) was purchased from eBioscience, Frankfurt, Germany.
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8

Tumor-Infiltrating Immune Cell Analysis

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Tumors were harvested and dissociated into single-cell suspensions. Then, cells were blocked with anti‐FcR (clone 2.4 G2, BD Pharmingen) and labeled with indicated surface markers for 30 min at 4°C. For IFN-γ staining, single-cells were cultured in the presence of a cell activation cocktail (with Brefeldin A) (Biolegend) for 5 h. Cells were permeabilized and stained with intracellular antibodies for 30 min at 4°C as instructed by the manufacturer. Dead cells were excluded using LIVE/DEAD Fixable Dead Cell Stain Kit (Invitrogen). The antibodies used in the flow cytometry analysis were: anti-CD45 (clone 30-F11, Invitrogen), anti-CD3 (clone 145–2C11, Biolegend), anti CD4 (clone RM4-5, Biolegend), anti-CD8 (clone 53–6.7, Biolegend), anti-IFN-γ (clone XMG1.2, Biolegend), anti-CD11C (clone N418, Biolegend), anti-CD80 (clone 16–10A1, Biolegend), and anti-CD86 (clone GL1, Invitrogen). Because the specific reaction with ovalbumin-derived peptide SIINFEKL bound to H-2 Kb of MHC class I, anti–H-2kb bound to SIINFEKL (clone 25-D1.16, Biolegend) was used to recognize the tumor specific immune cells. Flow cytometry was performed on the FACS Aria III platform (BD Biosciences, San Jose, CA, USA) and results analyzed using FlowJo software version 10.4 (TreeStar).
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9

Analyzing Antigen-specific CD8 T Cells

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Antigen-specific CD8 T cells were identified by labeling with Db/NP366 or Db/PA224in house prepared tetramers for 1 h at 4°C (22 (link)). Tetramer staining was followed by surface staining with appropriate antibody cocktails for 20 min at 4°C. Surface markers were stained using following antibodies: anti-CD8 (clone 53-6.7, BioLegend), anti-CD90.2 (clone 30-H12, BioLegend), anti-CD45.2 (clone 104, BioLegend), anti-CD103 (clone 2E7, BioLegend), anti-CD69 (clone H.12F3, BioLegend), anti-KLRG-1 (clone 2F1, eBioscience, San Diego, CA, USA), anti-CD127 (clone A7R34, BioLegend), anti-CX3CR1 (clone SA011F11, BioLegend), anti-CXCR3 (clone CXCR3-173, BioLegend), and anti-CD49a (clone Ha31/8, BD Pharmingen). Intracellular cytokine staining was performed using anti-IFNγ (clone XMG1.2, BioLegend), anti-TNF (clone MP6-XT22, BioLegend), and anti-IL2 (clone JES6-5H4, BioLegend) antibodies. Proliferation of CD8 T cells was assessed by intracellular staining with anti-Ki67 (clone MOPC-21, BD Pharmingen). Flow cytometry data were acquired using LSRFortessa (Becton Dickinson, Rutherford, NY, USA) and analyzed using the FlowJo software (Tree Star Inc., Ashland, OR, USA).
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10

Multicolor Flow Cytometry Analysis

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The following monoclonal antibodies were used: FcR‐blocking antibody (anti‐mouse CD16/CD32, clone 2.4G2; BD Pharmingen), FITC, PE, PerCP, or PerCP/Cy5.5‐conjugated anti‐CD335 (clone 29A1.4; BioLegend), anti‐CD49b (clone HMα2; BioLegend), anti‐CD11b (clone M1/70; BioLegend), anti‐CD4 (clone RM4‐5; eBioscience), anti‐CD8a (clone 53‐6.7; eBioscience), anti‐CD45.2 (clone 104; BioLegend), anti‐IFN‐γ (clone XMG1.2; BioLegend), Rat IgG2a,k (BD Pharmingen), Rat IgG2b, k control (BD Pharmingen), Rat IgG1k isotype‐matched control Abs (BioLegend), and PE/Cy7‐conjugated Armenian hamster IgG (BioLegend) Abs.
Cells were labeled at 4°C with specific antibodies. For intracellular cytokine analysis, cells were resuspended in RPMI‐1640 medium supplemented with 20% FBS, and phorbol 12‐myristate 13‐acetate (50 ng/mL), ionomycin (500 ng/mL), and brefeldin A (10 μg/mL; all from Sigma) were added. After incubation for 4 h, the cells were washed, stained for surface molecule markers, and fixed and permeabilized using IntraPrep reagent (Beckman Coulter), followed by intracellular staining of IFN‐γ. The stained cells were analyzed using a FACSCalibur (BD Biosciences).
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