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Goat anti rat igg h l alexafluor 488

Manufactured by Thermo Fisher Scientific
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Goat anti-rat IgG (H+L) AlexaFluor 488 is a secondary antibody used for fluorescent detection. It is produced in goats and specifically binds to the heavy and light chains of rat immunoglobulins. The antibody is conjugated to the AlexaFluor 488 fluorescent dye, which emits green fluorescence when excited.

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6 protocols using goat anti rat igg h l alexafluor 488

1

Immunofluorescence Staining Antibody Protocol

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Primary antibodies used for immunofluorescence staining were rabbit anti‐mouse ZO‐1 (Thermo Fisher Scientific, Cat No 61–7300), rat anti‐mouse VCAM‐1 (in house, clone 9DB3), rat anti‐mouse ICAM‐1 (in house, clone 25ZC7), rabbit anti‐caveolin‐1 (BD Biosciences, Cat N° 610060), and biotinylated rat‐anti‐mouse CD45 (Biolegend, CatN° 405237). Primary antibodies used for testing RNA‐seq candidate genes protein levels are listed in Table 2. Secondary antibodies used for immunofluorescence staining were goat anti‐rat IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat. No 112‐165‐003), donkey anti‐rat IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat No 712‐165‐153), goat anti‐rabbit IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat No 111‐165‐144), goat anti‐mouse IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat No 115‐166‐006) donkey anti‐rabbit IgG (H+L) AlexaFluor 488 (Jackson ImmunoResearch, Cat No 711‐546‐152), goat anti‐rat IgG (H+L) AlexaFluor 488 (Thermo Fisher Scientific, Cat No A11006); donkey‐anti‐rabbit Cy5 (Jackson ImmunoResearch, Cat No 711‐175‐152), and Streptaviding‐AlexaFluor 647 (Biolgegend, CatN° 103104).
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2

Immunofluorescence Analysis of Murine Kidney

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Mouse kidneys were collected at 28 days after ADR administration. Renal tissues were frozen with liquid nitrogen in OCT compound immediately after collection. Frozen tissues were sliced into 10-μm thickness using cryostat and attached onto glass slides. Sections were thawed with ice-cold acetone at − 20 °C for 5 min. After blocking with Protein Block Serum-Free (Dako, USA) at room temperature for 30 min, sections were reacted with primary antibody diluted at 1:100 and secondary antibody diluted at 1:300 with Antibody Diluent with Background Reducing Components (Dako, USA). Primary antibody was reacted overnight at 4 °C and secondary antibody was reacted for 1 h at room temperature. Polyclonal rabbit anti-WT-1 (sc-192; Santa Cruz Biotechnology), purified rat anti-mouse CD44 (#550538; BD, USA), Goat anti-rabbit IgG (H + L) Alexa Fluor 488 (A-11008; Thermo Scientific Inc., USA) and Goat anti-rat IgG (H + L) Alexa Fluor 488 (A-11006; Thermo scientific Inc., USA) were used for antibody reactions. Sections were incubated with 1 μg/mL of 4′,6-diamidino-2-phenylindole (DAPI) solution for 20 min at room temperature. Then, stained sections were mounted with VECTASHIELD mounting medium (Vector Laboratories, USA). Images were captured using BIOREVO microscope (Keyence, Japan).
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3

Multicolor Immunofluorescence Staining Protocol

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Frozen sections 6–8 μm thick were fixed in ice‐cold acetone, rehydrated in PBS and blocked with normal horse serum before antibody application. The following antibodies were purchased from BioLegend: anti‐CD1d (1B1), anti‐CD4 (RM4‐5), anti‐CD21/35 (7E9) and anti‐CD45R/B220 (RA3‐6B2). The following antibodies were purchased from BD Biosciences: anti‐CD35 (8C12), anti‐MAdCAM‐1 (MECA‐367) and anti‐TNP (G235‐1). Anti‐CD169 (MOMA‐1) and anti‐MARCO (ED31) were purchased from Bio‐Rad (Hemel Hempstead, UK). Anti‐CD209b/SIGNR1 (eBio22D1) and phycoerythrin (PE)‐conjugated anti‐Armenian hamster IgG were purchased from eBiosciences (ThermoFischer, Loughborough, UK). Anti‐CXCL13 (polyclonal) was purchased from R&D Systems. Streptavidin Alexa Fluor 594, goat anti‐rat IgG (H+L) Alexa Fluor 594, donkey anti‐goat IgG (H+L) Alexa Fluor 647 and goat anti‐rat IgG (H+L) Alexa Fluor 488 were purchased from ThermoFisher Scientific (Waltham, MA). Dako fluorescent mounting medium (Agilent, Santa Clara, CA) was used to apply coverslips before image acquisition. A Zeiss LSM5 Pascal (Carl Zeiss, Oberkochen, Germany) upright microscope with zen software (Rochdale, UK) was used for image collection.
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4

Whole-Mount Staining of Mouse Hindpaw Tissues

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Mouse hind paw tissues were processed for whole-mount staining. Briefly, full-thickness paw skin was dissected and fixed in 4% paraformaldehyde (PFA) in PBS for 4–6 hours at room temperature, washed in PBS, and then blocked with 0.2% Triton X-100, 5% normal donkey serum, 1 % BSA in PBS overnight at 37°C. The samples were then incubated with primary antibodies for 48–72 h and secondary antibodies for 24 h on a rocker at 37°C. The anti-phospho-histone H3 (Ser10) antibody was from EMD Millipore (06–570) and was used at a 1:100-fold dilution; anti-Flk-1 (VEGFR2) antibody was from BD Biosciences (555307) and was used at 1:100-fold dilution; anti-ERG antibody was from Abcam (AB92513) and was used at 1:200-fold dilution; goat anti-rabbit IgG H&L (Alexa Fluor®) 568, goat anti-rat IgG H&L (Alexa Fluor®) 568, goat anti-Chicken IgY H&L (Alexa Fluor®) 488, and goat anti-rat IgG H&L (Alexa Fluor®) 488 was from ThermoFisher and was used at a 1:400-fold dilution. Tissue samples were mounted with Vectashield anti-fade mounting medium (Vector Laboratories) on individual slides and imaged on a LaVision TriM Scope II, as described in ‘In vivo imaging.’
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5

Immunofluorescence Tubulin Detection Protocol

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Antibodies and dilutions used in immunofluorescence assays were: rat anti-Tyrosinated -Tubulin, clone YL1/2 (EMD Millipore Corporation, Billerica, MA, US, MAB1864, 1:500), mouse anti-Acetylated Tubulin, clone 6-11B-1 ((Sigma-Aldrich, T7451, 1:1000), goat anti-Rat IgG (H+L) Alexa Fluor 488 (ThermoFischer, A-11006, 1:1000), and goat anti-Mouse IgG (H+L) Alexa Fluor 555 (ThermoFischer, A-21424, 1:1000).
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6

Visualization of Ntcp and ZO-1 in Hepatocytes

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At 72 h after plating for immunofluorescence staining of Na + -taurocholate co-transporting polypeptide (Ntcp) and TJ component ZO-1 the cells were fixed and permeabilized with 4% paraformaldehyde in PBS for 15 min, then with ice cold methanol for an additional 15 min. The cells were labeled with primary antibodies against Ntcp (K4, obtained from Bruno Stieger) 1:250 and ZO-1 (Millipore, MABT11) 1:200 for overnight, following a 1 h blocking with Dulbecco's modified PBS (DPBS) containing 2 mg/ml BSA, 1 % fish gelatin, 0.1 % Triton X-100, and 5 % goat serum (pH 7.2). Goat anti-Rabbit IgG H&L Alexa Fluor® 594 (Thermo Fisher Scientific, A-11012) 1:250
and Goat anti-Rat IgG H&L Alexa Fluor® 488 (Thermo Fisher Scientific A-11006) 1:250 secondary antibodies were used. The cell nuclei were stained with 1 μM DAPI in DPBS for 10 min. The blue, green and red fluorescence of stained samples was studied by a Zeiss LSM 710 confocal laser scanning microscope using a Plan-Apochromat 20 × (numeric aperture 0.8) dry objective (Zeiss) at 405, 488 and 543 nm excitations, respectively. For visualization the publicly available software ImageJ 1.46q was used (NIH, USA).
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