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4 protocols using ab103314

1

Immunohistochemical Analysis of PYCR1 Expression

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All tissues were fixed in 10% formalin, routinely dehydrated, dipped in wax, embedded in paraffin, and sliced to a thickness of 4 μm. Phosphate-buffered saline was used instead of primary antibody as a negative control. The primary antibody was PYCR1 (polyclonal rabbit antibody, ab103314; Abcam Inc, concentration: 1:100), dewaxing using xylene, dephenylation using ethanol, 3% dehydrogenation of endogenous peroxidase by hydrogen peroxide, repaired by high pressure of citric acid, and overnight refrigeration at 4°C. The secondary antibody (goat anti-rabbit antibody, SP-9000; Beijing Zhongshan Jinqiao Biotechnology Co, Ltd, Beijing, China) was incubated in a 37% water bath for 25 minutes, followed by DAB mean (3,3′-diaminobenzidine, DAB) coloration, hematoxylin staining, and sealing. PYCR1 protein expression was shown by brown staining mainly in the cytoplasm. PYCR1 expression was evaluated by 2 independent pathologists.
The expression of PYCR1 was measured by staining index. Scoring was based on the following criteria:
Staining index = positive staining cells + cell staining intensity, score (0–12). A staining index of >3 suggests a high expression, a staining index of ≦ 3 for low expression.[9 (link),11 (link)]
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2

Immunohistochemical Analysis of PYCR1 in Pancreatic Tissue

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All pancreatic tissues were fixed in 10% formalin and embedded in paraffin. The sections were dewaxed with xylene and dehydrated with ethanol. After deparaffinization, the sections were treated with 3% hydrogen peroxide for 10 minutes. For antigen retrieval, the sections were heated in sodium citrate buffer (pH 6.0) for 20 minutes. After that, sections were cooled to room temperature naturally and dipped in distilled water for 10 min. Sections were blocked with 10% fetal bovine serum (FBS) for 30minutes and incubated overnight with primary rabbit polyclonal anti-PYCR1 antibody (1:100, Abcam, ab103314). Then, the second antibody and Vulcan Fast Red Chromogen kit2 was added. Sections were stained with diaminobenzidine (DAB) and were counterstained with hematoxylin. The results were observed under an optical microscope after dehydration and sealing.
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3

Quantifying PYCR1 Protein Expression

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Total protein was extracted from tissue lysate and the protein concentration was measured. An acrylamide gel was prepared at 10% for separation and 5% for loading, 40 μg of protein per well was subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, then transferred to a polyvinylidene difluoride membrane, blocked, and exposed to rabbit anti-goat PYCR1 polyclonal antibody (ab103314; Abcam Inc, Cambridge, UK) overnight at 4°C. The secondary antibody was incubated for 2 hours at room temperature. β-actin was used as an internal reference. The relative expression of PYCR1 protein was calculated by using a biological imaging system. Each experiment was repeated 3 times.
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4

Protein Extraction and Immunoblotting Analysis

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Proteins were extracted from cultured cells, which was followed by immunoblotting with the primary antibodies. Protein concentrations were determined by Bradford assay. Proteins were separated by SDS-PAGE, transferred onto PVDF membranes (Millipore Corporation, Burlington, MA, USA), and probed with the indicated antibodies. Antibodies that recognise ASS1 (ab175607), PYCR1 (ab103314), IGF1R (ab182408), c-MYC (ab32072), c-MYCT58 (ab185655), JAK1 (ab133666), JAK1-P (ab138005), STAT3 (ab32500), STAT3-P (ab267373), PI3K (ab191606), PI3K-P (ab182651), AKT (ab179463), AKT-P (ab192623), mTORC (ab134903), and β-actin (ab8227) were purchased from Abcam (Cambridge, UK). Immunoblotting assays were performed as previously reported [18 (link)].
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