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9 protocols using hoechst 33342

1

Immunofluorescent Analysis of Retinal Microglia

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The mice were anesthetized with the IP injection of 1.5% sodium pentobarbital. Eyes were dissected out and post-fixed in 4% Paraformaldehyde solution (PFA) at 4°C for 1 h. For frozen sections, tissues were immersed in 10% and 20% sucrose for 30 min and in 30% sucrose overnight before sectioning in a cryostat with section thickness of 10 μm for retina. Before staining, retinal sections were incubated with 5% BSA and 1% Triton X-100 in Phosphate-buffered saline (PBS) for 1 h at room temperature, rinsed with the blocking solution, put into the blocking solution containing the primary Ionized calcium-binding adapter molecule 1 (IBA-1) antibody (1:500; Wako, cat. no. 019-19741, Japan), and incubated in a humidified box at 4°C for 12 to 16 h. After several washes, sections were incubated with the Alexa Fluor 488 secondary antibody (1:500, Thermo Fisher Scientific, USA, cat. no. A-11034). In addition, nuclei were stained with Hoechst 33342 (Sangon Biotech, USA, cat. no. E607302). The immunofluorescent images were obtained using a confocal microscope (Leica, Germany).
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2

Oocyte Mitochondrial Staining Protocol

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Oocytes and PB2–FPPN complexes were transferred to the operation solution (mHTF with 2.5 µM cytochalasin B/CB, 14930‐96‐2, Sigma) containing MitoTracker (1:2000, M22426, Thermo, USA), stained for 20 min, and Hoechst33342 (E607302‐0005, Sangon) was used to mark the nucleus of living cells (37°C, 20 min). Then, the samples were transferred to fresh operation solution for 10 min to wash off any unbound dye. After the PB2T operation, the samples were imaged with an Olympus confocal microscope.
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3

Cell Viability Assay Protocol

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Cell viability was determined by cell staining. The device was disassembled on Day 7, and the cultured tissue was placed in a 48-well plate for cell staining. Calcein-AM (Aladdin Industrial Corporation, Shanghai, China), propidium iodide (PI, Sangon Biotech Co., Ltd., Shanghai, China), and Hoechst 33342 (Sangon Biotech Co., Ltd., Shanghai, China) were used to identify living cells, dead cells, and cell nuclei, respectively (Fig. S14A). The cells were stained according to the manufacturer’s instructions and observed using a fluorescence microscope (IX73; Olympus, Tokyo, Japan)49 (link). ImageJ software was used to analyze the viability of cells (i.e., the ratio of the number of living cells to the number of cell nuclei).
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4

Synthesis and Characterization of Nanoparticles

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Urea (CO(NH2)2), ethanol, and hydrochloric acid (36.0–38.0 wt%), were purchased from Sinopharm Chemical Reagent Co., Ltd (China). Citric acid, sodium hydroxide, and 1, 3-diphenylisobenzofuran (DPBF) (C20H14O) were obtained from Sigma-Aldrich Co. LLC. Hoechst 33342, propidium iodide (PI), penicillin, streptomycin, tetraethyl orthosilicate (TEOS), (3-Aminopropyl) triethoxysilane (APTES), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), pancreatin solution (25 wt%), high glucose medium (DMEM), polyvinyl pyrrolidone (PVP), and fetal bovine serum (FBS) were purchased from Sangon Biotech Inc. Tetrabutyl titanate (TBOT), and ammonia (25.0–28.0 wt%) were obtained from Macklin Inc. All the agents were analytical pure and used as received without further purification. The water used in the experiments was deionized (Milipore Mili-Q grade) with resistivity of 18.0 MΩ·cm.
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5

Fluorescent Staining of HT22 Cells

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HT22 cells were cultured in 35-mm confocal dishes. After treatment, HT22 cells were fixed with 4% paraformaldehyde for 15 minutes and then stained with 2 μM BD493 or BD581 for 15 minutes at room temperature. Then, the cells were stained with Hoechst33342 (Sangon, Cat# E607302) for 5 minutes at room temperature. After three washes with PBS, the cells were imaged using a confocal microscope (Leica, Wetzlar, Germany). Fluorescence images were acquired by excitation at 405-, 488-, or 594-nm light derived from diode lasers.
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6

Cellular Uptake of Doxorubicin Nanoparticles

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A total of 2 × 105 cells/well MCF-7 cells were seeded in 6-well plates for 24 h. Then, the samples (free DOX, DOX@Fe-PDA/FA-PEG) were added to each well (equivalent DOX concentration of 10 μg/mL) and the cells were incubated at 37°C for an appropriate time at an additional of 24 h. Afterward, the cells were washed with PBS and stained by Hoechst 33342 (Sangon Biotech, Shanghai, China). Confocal laser scanning microscopy (CLSM) imaging was performed on LSM 410 fluorescence microscope (Zeiss, Jena, Germany). The fluorescence signal of DOX was excited at 488 nm and measured at 610 nm. The fluorescence signal stained by Hoechst 33342 was excited at 405 nm and detected at 490 nm.
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7

Karpas 299 Cell Transfection and Imaging

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First, the Karpas 299 (K299) cells were obtained from CoBioer Biosciences Co., Ltd. (Nanjing, China) and cultured in RPMI 1640 medium with 10% (v/v) FBS and 1% penicillin-streptomycin at 37 oC in a humid atmosphere with 5% CO2. The cells density was determined using a hemocytometer before each experiment. Then, K299 cells were seeded on the 48-well culture plate (3 × 104 cells per well) and incubated for 12 h. The transfection was performed according to the XfectTM RNA Transfection Reagent instructions (TaKaRa Biomedical Technology Co., Ltd., China). After transfection for 8 h, the cell nucleus was stained with 10 μL of Hoechst 33342 (Shanghai Sangon Biotech, China) at 37 °C for 30 min. The cells were washed twice with 500 µL of 1× PBS by centrifugation at 1000 rpm for 3 min, followed by resuspending with 300 μL of 1× PBS. Finally, the images were recorded and analyzed by Nikon Confocal Microscope A1 (Nikon, Japan).
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8

Ferroptosis Induction and Measurement

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P53 and α-tubulin antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). ACSL4, SLC7A11, and NOX2 antibodies were purchased from Abclonal (Wuhan, China). Horseradish peroxidase (HRP)-conjugated IgG (H + L) secondary antibodies and CellROX Green Reagent were purchased from Thermo Scientific (Waltham, MA, USA). The Gpx4 antibody was obtained from Abcam (Cambridge, MA, USA). The Cytotox 96 nonradioactive cytotoxicity assay kit was purchased from Promega (Fitchburg, USA). Erastin was purchased from MCE (New York, NY, USA). The Lipid Peroxidation (MDA) Assay Kit, and GSSG/GSH quantification kits were purchased from Beyotime (Shanghai, China). Hoechst 33342 and one-step RT-qPCR kits were purchased from Sangon Biotech (Shanghai, China). Ferrostatin-1 (Fer-1) was purchased from Solarbio Science & Technology (Beijing, China). Precast Gel was purchased from Tsingke Biotechnology (Beijing, China). ChamQ Universal SYBR qPCR master mix was purchased from Vazyme Biotech (Nanjing, China). FerroOrange was purchased from Dojindo Molecular Technology (Kyushu, Japan). Gentamicin and other chemicals were from Sangon Biotech (Shanghai, China). All drug concentrations are expressed as the final molar concentration in working buffer.
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9

Targeting IGF1R with siRNA in Cancer Cells

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DOX hydrochloride was purchased from Nanjing Oddfoni Biological Technology Co., Ltd (Nanjing, China). The siRNAIGF1R with the sequence of 5′-CAUACUGCGCUCUAUAGAUTT-3′ was selected for targeting the IGF1R gene. The double-stranded siRNAIGF1R and FAM-labeled siRNAIGF1R (FAM: carboxyfluorescein) were designed and chemically synthesized by GenePharm Co., Ltd (Shanghai, China). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell proliferation and cytotoxicity assay kit, Annexin V-FITC apoptosis detection kit, Hoechst 33342, 4% paraformaldehyde, folate, biotin, RPMI-1640 medium, phosphate-buffered saline (PBS), fetal bovine serum (FBS), bicinchoninic acid (BCA) protein assay kit and polyvinylidene difluoride (PVDF) membrane were provided by Sangon Biotech Co., Ltd (Shanghai, China). Mouse monoclonal IGF1R beta chain antibody and HRP-conjugated beta-actin antibody, HRP-conjugated goat anti-mouse IgG (H + L) were from Proteintech Group, Inc (USA). All other reagents used were analytical grade and ultrapure water (18.25 MΩ) was used throughout the study.
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