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24 protocols using p3932

1

Anchorage-Independent Growth Assay

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To study anchorage-independent growth, 6-well plates were coated twice with polyhydroxyethylmetacrylate (poly-HEMA; Sigma Aldrich, P3932) (20 mg/ml, in 95% ethanol, sterile-filtered) and dried under flow cabinets at RT. Cells were seeded at low density (2.5 × 104 cells/well) in poly-HEMA-coated wells. Formation of aggregates was documented for up to 96 h by light microscopy (Leica DMi1, Leica Microsystems, Wetzlar, Germany) at 4× magnification. Cell cluster sizes were evaluated in ImageJ software using a self-written macro. After 96 h of anchorage-independent growth, HT29 and ATF2-KO cells were stained with 2 µM calcein (Thermo Fisher, Waltham, MA, USA) for 30 min at 37 °C, 5% CO2, and imaged by fluorescent microscopy (Nikon Eclipse Ti-S) at 4× magnification.
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2

Suspension Culture for Cell Viability

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Cell culture plates were coated with poly-HEMA (P3932; Sigma-Aldrich, St. Louis, MO, USA), a non-adhesive substratum, and allowed to evaporate to dryness at room temperature. Cells were kept in suspension by using poly-HEMA-coated plates to prevent adhesion. After 48 h of suspension, cells were harvested for cell viability analysis by 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) assay and cell apoptosis analysis by flow cytometry.
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3

Luminescent ATP Detection Assay

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For the measurement of total ATP, the luminescent ATP detection assay (Cat. ab113849 Abcam) was used. Briefly, the day before the assay 5000 cells/well were seeded on untreated and polyhema-treated (P3932, Sigma-Aldrich) 96 well plates and allow to grow overnight in DMEM 10% FBS, incubated at 37 °C and 10% CO2. Cells cultured on polyhema plates were grown as suspension cells. The day after, ATP was quantified according to the manufacturer’s protocol.
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4

Anchorage-Independent Cell Assay

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Colony formation assay in soft agar was carried out as previously described.12 Colony formation assay in detached culture was done using poly‐2‐hydroxyethyl methacrylate (HEMA; P3932; Sigma‐Aldrich). Cells (1 × 105) were cultured in six‐well plates precoated with poly‐HEMA for 2 days.
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5

Culturing Breast Cancer Cells in Poly-HEMA

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Human BCCs SK-BR-3 and MDA-MB-231 were purchased from the Type Culture Collection of the Chinese Academy of Sciences, Shanghai, China. SK-BR-3 and MDA-MB-231 were cultured in high-glucose DMEM medium (12800-017, Gibco, USA) with 10% FBS (TBD21HY, TBD science, Tianjing, China), 100 units/mL penicillin/streptomycin, 2 mM L-glutamine (G8540, Sigma, Saint Louis, USA), 26 mM NaHCO3 in a humidified 95% air/5% CO2 environment at 37 ºC. Modified from previous research 54 (link), 1 mL of poly (2-hydroxyethyl methacrylate) (Poly-HEMA; P3932, Sigma,Saint Louis, USA) solution (100 mg/mL, dissolved in 95% ethanol) was added into six-well plates and filled the bottom of the culture plates. Excess liquid was sucked away and the six-well plates were placed under sterile condition in a laminar flow hood to dry. The Poly-HEMA-treated six-well plates were washed with phosphate buffer solution (PBS).BCCs were seeded at 5×104 cells/mL in Poly-HEMA-treated 6-well plates with complete medium. Conventional adherent culture BCCs were used as the control.
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6

Tumorsphere Formation Assay Protocol

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A single cell suspension was prepared using enzymatic (1× Trypsin-EDTA, T3924, Sigma Aldrich), and manual disaggregation (25 gauge needle) [27 (link)]. Cells were plated at a density of 5000 cells/well in tumorsphere media (DMEM-F12/B27/EGF (20ng/ml)/Pen-Strep) in non-adherent conditions, in 6-well plates coated with (2-hydroxyethylmethacrylate) (poly-HEMA, P3932, Sigma) in the presence of mDIVI1 or vehicle. After 5 days of culture in a humidified incubator at 37° C, tumorspheres bigger than 50 μm were counted using an eye piece graticule.
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7

Culturing Colorectal Carcinoma Spheroids

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The human colorectal carcinoma (CRC) cell line SW620 was obtained from the cell bank of the IRCCS Ospedale Policlinico San Martino, Genoa (kind gift of Dr. Alessandro Poggi MD, Head of the Molecular Oncology and Angiogenesis Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy). SW620 cell line was cultured in RPMI 1640 (Corning, New York, NY, USA) medium supplemented with 10% fetal bovine serum (FBS, Gibco™, Thermo Fisher Scientific Italy, Monza, Italy), penicillin/streptomycin and l-glutamine (Corning, New York, NY, USA) in a humidified incubator at 37 °C with 5% CO2.
For the generation of tumor spheroids, SW620 adherent cells were detached with Trypsin/EDTA (Corning, New York, NY, USA) and counted using a standard hemocytometer.
Then, SW620 cell suspension was seeded at the concentration of 1.8 × 104 cells per well in flat-bottom 96-well plate (Corning®Costar®, New York, NY, USA) pre-treated with Poly-HEMA 3% in EtOH 96% (P3932, Sigma Aldrich, Merck, Milano, Italy) to prevent cell adhesion, in serum-free DMEM-F12 medium (Euroclone, Milan, Italy), supplemented with epithelial growth factor (EGF) (Peprotech Europe, London, UK) at 10 ng/mL final concentration (≥1 × 106 U/mg). Experiments were performed at proper spheroids compaction, after approximately 1 week of culture.
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8

Poly(2-hydroxyethyl methacrylate) Spheroid Generation

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To make the poly(2-hydroxyethyl methacrylate) (pHEMA, Sigma-Aldrich P3932) solution, pHEMA pellets (1.2 g) were dissolved in 95% ethanol in water (38 mL). The solution was stirred overnight at room temperature, then sterile-filtered using a tube top filter unit (MilliporeSigma SCGP00525) and stored at 4 °C prior to future use. Cell culture plates were coated with pHEMA (15 μL cm−2) and dried overnight at room temperature in a biosafety cabinet. For spheroid generation, SKOV-3 cells (2 million) suspended in maintenance media (10 mL) were plated on a 100 mm diameter pHEMA-coated culture dish. Spheroid size, represented as an average of two perpendicular diameters, was measured using ImageJ software.
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9

Clonogenic Assay for Anchorage-Independent Growth

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Tissue culture plates were coated with 1% poly (2-hydroxyethyl methacrylate) (polyHEMA; Sigma P3932) solution in 95% ethanol, and allowed to completely dry at room temperature. Cells (1 × 105 cells/mL) were cultured for 24 hours on 1% polyHEMA plates to prevent adhesion, collected, washed with PBS and 2 mM EDTA and replated into 6-well plates (100 - 1000 cells/well). For some experiments ERK signaling was inhibited by pre-treating NSCLC cell lines with 60 μM PD98059 for 45 minutes prior to plating. In some cases cells were maintained in PD98059 for the duration of the clonogenic assay. Colonies were stained with crystal violet (0.5% crystal violet, 6% glutaraldehyde), and quantified using ImageJ [20 (link), 51 (link)].
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10

BeWo spheroid attachment to Ishikawa cells

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Ishikawa cells in a 24-well plate were stimulated as indicated. 80%-90% confluence of BeWo cells were digested to the cell suspension and then placed in a 60 mm2 dish coated with the anti-adhesive polymer, poly-2-hydroxyethyl methacrylate (P3932, Sigma), to inform 150–200 μm BeWo spheroids after 36 h culture. The spheroids were transferred to confluent Ishikawa cell monolayers. After incubation at 37 °C for 40 min, the unattached spheroids were removed by washing with PBS. The attachment rate was valued as the number of attached spheroids divided by the total number of spheroids added to the Ishikawa cells.
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