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Anti hnrnp 1

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-hnRNP I is a laboratory product used to detect and study the hnRNP I protein, which is involved in various cellular processes. This antibody can be utilized in techniques such as Western blotting, immunoprecipitation, and immunohistochemistry to identify and analyze the hnRNP I protein in biological samples.

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6 protocols using anti hnrnp 1

1

Protein Expression Analysis by Western Blot

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Cells were lysed using RIPA buffer containing 1 mM PMSF and 1% complete protease inhibitor (Roche Applied Science; Indianapolis, IN, USA) to extract the proteins. The protein concentration was detected using BCA protein Assay Kit (Thermo Pierce). The proteins were subjected to SDS-PAGE and transferred to NC membrane (Pall Life Science; Port Washington, NY, USA). After blocking with 5% skim milk, NC membrane was incubated overnight at 4 °C with different primary antibodies: anti-hnRNP I (1:1000; Santa Cruz Biotechnology, Inc; CA, USA); anti-hnRNP L (1:1000; Santa Cruz Biotechnology, Inc; CA, USA); anti-GLS2 (1:1000; Santa Cruz Biotechnology, Inc; CA, USA); anti-GPT2 (1:1000; Abbacy, Cambridge, UK); anti-SLC1A5 (1:500; Santa Cruz Biotechnology, Inc; CA, USA); anti-SLC7A5 (1:500; Santa Cruz Biotechnology, Inc; CA, USA); anti-β actin (1:3000; CST; Beverly, MA, USA). After being washed, the membranes were incubated with HRP-conjugated goat-anti-mouse secondary antibodies (1:5000; Pierce; Rockford, IL, USA) for 1 hr at room temperature and visualized using Clarity™ Western ECL Substrate (Bio-Rad; Richmond, CA, USA).
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2

ChIP Assay for Transcription Factor Binding

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ChIP experiments were performed using EZ-Magna ChIP™ A/G Chromatin Immunoprecipitation Kit (#17–10,086, Merck Millipore, Billerica, MA, USA) according to the manufacturer's procedures. Cells were fixed in 1% formaldehyde for 10 min at room temperature to crosslink UCA1 to DNA. Nuclei were isolated with 500 μl nuclear lysis buffer supplemented with 2.5 μl protease inhibitor cocktail II. Chromatin DNA was sonicated (8 min total, AmpL 30%, pulse on 10 s, pulse off 30 s) and sheared to a length between 200 bp to 1000 bp. The sheared cross-linked chromatin was incubated and rotated with immunoprecipitating antibodies: anti-hnRNP I (1.2 μg/reaction; Santa Cruz Biotechnology, Inc; CA, USA)), anti-hnRNP L (1 μg/reaction; Santa Cruz Biotechnology, Inc; CA, USA), normal Mouse IgG (1 μg/reaction) or anti-RNA Polymerase (1 μg/reaction) overnight at 4 °C. Primers for ChIP-qPCR are listed in Table 2.
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3

Quantitative Immunohistochemical Analysis of Protein Expression

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Immunohistochemical analysis for the protein expression was performed as previously described [26] (link) using anti-hnRNP I (1:500; Santa Cruz Biotechnology, Inc; CA, USA) anti-hnRNP L (1:500; Santa Cruz Biotechnology, Inc; CA, USA) GPT2 (1:300; Abcam, Cambridge, MA, USA). Slides were incubated overnight at 4 °C, and immunostaining was performed with a SPlink Detection Kit and DAB (ZSBIO, Beijing, China). Stained slides were captured and imaged by microscopy. The image quantification was analyzed using ImageJ (1.52q) with the IHC Profiler plugin [27] (link). The staining intensity was graded as negative (0), low positive (1+), positive (2+), or high positive (3+). H score was calculated by the following formula: [1 × (% cells 1+) + 2 × (% cells 2+) + 3 × (% cells 3+)].
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4

Protein Expression Analysis and RNA Pulldown

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Immunohistochemical analysis for the protein expression was performed as previously described [26] using anti-hnRNP I (1:500; Santa Cruz Biotechnology, Inc; CA, USA) anti-hnRNP L (1:500; Santa Cruz Biotechnology, Inc; CA, USA ) GPT2 (1:300; Abcam, Cambridge, MA, USA ). Slides were incubated overnight at 4 °C, and immunostaining was performed with a SPlink Detection Kit and DAB (ZSBIO, Beijing, China). Stained slides were captured and imaged by microscopy. The image quanti cation was analyzed using ImageJ(1.52q) with the IHC Pro ler plugin [27] . The staining intensity was graded as negative (0), low positive (1+), positive (2+), or high positive (3+).
RNA pull-down RNA pull-down assays were performed using PierceTM Magnetic RNA-Protein Pull-Down Kit (#20164, Thermo Fisher Scienti c, Waltham, MA, USA) according to the manufacture's protocol. The RNA fragments of the entire UCA1 sequence, deleted form, or mutant form, were synthesized by GenePharma (Shanghai, China).
Biotinylated RNA was bound to streptavidin magnetic beads and then incubated with cell lysates. RNA-binding protein complexes were washed and eluted. The retrieved samples were heated (10 minutes, 95℃) and detected by western blot analysis.
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5

Immunoblotting of NC membrane proteins

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Block NC membrane was incubated overnight at 4°C with different primary antibodies: anti-hnRNP I (1:1000; Santa Cruz Biotechnology, Inc; CA, USA); anti-hnRNP L (1:1000; Santa Cruz Biotechnology, Inc; CA, USA); anti-GLS2 (1:1000); anti-GPT2 (1:1000; Abbacy, Cambridge, UK); anti-SLC1A5(1:500); anti-SLC7A5(1:500); anti-β actin (1:3000; CST; Beverly, MA, USA). After being washed, the membranes were incubated with HRPconjugated goat-anti-mouse secondary antibodies (1:5000; Pierce; Rockford, IL, USA) for 1 hr at room temperature and visualized using Clarity™ Western ECL Substrate (Bio-Rad; Richmond, CA, USA).
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6

ChIP-Seq Protocol for Identifying Protein-DNA Interactions

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ChIP experiments were performed using EZ-Magna ChIP TM A/G Chromatin Immunoprecipitation Kit (#17-10086, Merck Millipore, Billerica, MA, USA) according to the manufacturer's procedures. Cells were xed in 1% formaldehyde for 10 min at room temperature to crosslink UCA1 to DNA. Nuclei were isolated with 500 μl nuclear lysis buffer supplemented with 2.5 μl protease inhibitor cocktail II. Chromatin DNA was sonicated (8min total, AmpL 30%, pulse on 10 s, pulse off 30 s) and sheared to a length between 200 bp to 1000 bp. The sheared cross-linked chromatin was incubated and rotated with immunoprecipitating antibodies: anti-hnRNP I (1.2μg/reaction; Santa Cruz Biotechnology, Inc; CA, USA)), anti-hnRNP L (1μg/reaction; Santa Cruz Biotechnology, Inc; CA, USA), normal Mouse IgG (1μg/reaction) or anti-RNA Polymerase (1μg/reaction) overnight at 4 °C. Primers for ChIP-qPCR are listed in Table 2.
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