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Pcdna3.1 v5 his expression vector

Manufactured by Thermo Fisher Scientific
Sourced in Japan, United States

The PcDNA3.1-V5/His expression vector is a plasmid commonly used for the expression of recombinant proteins in mammalian cell lines. It contains a powerful CMV promoter for high-level expression, as well as a C-terminal V5 epitope tag and a 6xHis tag for detection and purification of the expressed protein.

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5 protocols using pcdna3.1 v5 his expression vector

1

Mutation of VFT domains in SmVKR1 and SmVKR2

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Full-length SmVKR1 and SmVKR2 sequences inserted in frame into the pcDNA3.1-V5/His expression vector (Invitrogen) [30] (link) were mutated in their respective VFT domain by replacement of Ser466 and Ser410 residues into Ala using the QuickChange Site-Directed Mutagenesis Kit (Stratagene), and the SmVKR1S466AF and SmVKR2S410AF primers (Table S2) and their respective reverse complement sequences.
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2

Cloning and Characterization of WNV NS4B Protein

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Standard molecular biology techniques were used for cloning [19 ]. Briefly, viral RNA was extracted from the supernatant of Vero cells infected with WNV NY99 strain using the QIAamp Viral RNA mini kit (Cat#52904, Qiagen, Hilden, Germany). Extracted RNA was used as a template to generate cDNA with the SuperScript IV first-strand synthesis kit (Cat#18091050, ThermoFisher Scientific, Waltham, MA, USA). The cDNA was used as template for PCR with the NS4B primer pairs as described previously [9 (link)]. The PCR-amplified WNV NS4B gene was either fused to the Cycle 3 green fluorescent protein (GFP) in TA cloning vectors pcDNA3.1/CT/NT-GFP-TOPO (NS4B-GFP plasmid) or to a V5 epitope in a pcDNA3.1/V5-His expression vector (NS4B-V5/His plasmid) from Invitrogen as described previously [9 (link)]. The resulting WNV NS4B-GFP and NS4B-V5/His plasmids (Supplementary Figure S2) were verified by restriction enzyme digest and sequencing. Analysis of the plasmid DNA sequence was performed using DNASTAR Lasergene 7.1 Sequence Analysis software (Madison, WI, USA).
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3

Identification and Characterization of S. mansoni Akt

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A putative S. mansoni Akt sequence was identified in Genbank (XM_002578520.1) by tBLASTp analyzes of the S. mansoni genome data bases (Berriman et al., 2009 (link)). 5′ and 3′ UTR were determined with the SmAkt encoding ESTs AM042871.1, CF497410.2, AA169931.1 and CF498818.1. The cDNA sequence of SmAkt was obtained by PCR amplification of total cDNA obtained from adult S. mansoni RNA (prepared using TRIzol® reagent, Invitrogen) by reverse transcription using the Superscript III (Invitrogen). The SmAkt sequence was amplified using SmAktFLf (5′-CGGCACGAGGCCAAGTCTTAAATGCTAGT-3′) and SmAktFLr (5′-GTTAAATCATGTTGGTGGCAGTCAATTGAACT-3′) primers, cloned into a pCR2.1 TOPO cloning vector (Invitrogen) and sequenced (EurofinsDNA). A second PCR was performed using as primers SmAktFLRE-f (5′-CCggatccGTTATCGAGATTGCAGATTTTCTGGG-3′) and SmAktFLRE-r (5′-GCctcgagAAAATGTGTCACCAAAACTATAACCAC-3′) containing, respectively, BamHI and XhoI restriction sites and the fragment was inserted in frame in the pcDNA3.1-V5/His expression vector (Invitrogen). Site-directed mutagenesis was performed on the wild-type (WT) SmAkt construct to produce SmAkt E117K and SmAkt L150R active mutants using, respectively, the 5′-GGCTTATGAAACGCGGCAAACATATTAAAAATTGGCGACG-3′ and 5′-TAAAGATGATATGGCGCAACCTCGAAATAATTTTACTGTTCGCG-3′ mutated sequences and their reverse complement as primers.
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4

Cloning and Expression of BAP1

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cDNA fragments of WT or mutant BAP1 were amplified by PCR using PrimeSTAR Max DNA polymerase (Takara Bio, Otsu, Japan), and introduced into the pcDNA3.1 V5-His expression vector (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA), thereby fusing these cDNAs with the V5-His sequence. The sequences of all constructs were confirmed. To generate BAP1 expressing lentiviral vector, cDNA coding for the human BAP1 tagged with V5-His was amplified by PCR and cloned into the pLL3.7 lentiviral vector with an infusion cloning system (Clontech, Mountain View, CA, USA).
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5

Generation of ISG15 Expression Plasmid and Knockdown

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The ISG15 expression plasmid was constructed by amplifying the entire open reading frame of the human ISG15 gene with the polymerase chain reaction (PCR) using p3XFLAG-CMV-14-ISG15 plasmid (kindly provided by Dr Douglas W. Leaman of the University of Toledo) as a template and inserted into the pcDNA3.1/V5-His expression vector (Invitrogen, Carlsbad, CA, USA). The primers for amplification of ISG15 were 5′-GATCACCCAGAAGA TCGGCG-3′ (forward), and 5′-GGATGCTCAGAGGTTC GTCG-3′ (reverse). The oligonucleotides, which encode a 19-mer hairpin sequence specific to the ISG15 mRNA, were incorporated into the pSilencer-neo plasmid (Ambion, Naugatuck, CT, USA). The sequence of ISG12a shRNAs targeting regions of ISG15 was 5′-TTCGTCGCATT TGTCCACCA-3′. miR-138 mimics (5′-AGCUGGUGUUG UGAAUACAGGCCG-3′) were purchased from Genepharma (Suzhou, China). All constructs were confirmed by DNA sequencing and transfected into cells using Lipofectamine 2000 reagent (Invitrogen). The transfected cells were cultured in DMEM with 10% fetal bovine serum for 24-72 h before analysis.
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