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4 protocols using anti gfp alexa fluor 488 conjugate

1

Embryonic Immunohistochemistry Protocol

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Embryos were fixed in 4% paraformaldehyde (PFA; Sigma), and immunohistochemistry was performed as previously described (Prince et al., 1998 (link)) using the following primary antibodies: rabbit polyclonal anti-Cdh1 (E-Cadherin; 1:100; GeneTex GTX100443), rabbit polyclonal Cdh2 (N-Cadherin; 1:200; GeneTex GTX125885), rabbit polyclonal anti-Sox10 (1:250; Genetex GTX128374) and rabbit polyclonal anti-Caspase-3 (1:100; Millipore #AB3623). The following secondary antibodies were used: goat-anti mouse highly cross-adsorbed Alexa Fluor Plus 488 (Molecular Probes A32723), goat anti-rabbit highly cross-adsorbed Alexa Fluor 488 (Molecular Probes A11034), goat anti-rabbit cross-adsorbed Alexa Fluor 546 conjugate (Molecular Probes A11010), and anti-GFP Alexa Fluor 488 conjugate (Molecular Probes A21311). Embryos were then cleared in 80% glycerol, deyolked and flat-mounted.
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2

Whole-Mount Immunostaining of Zebrafish Embryos

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Embryos were fixed in 4% paraformaldehyde (PFA; Sigma), then washed in PBS containing 0.5% Triton-X (PBST). Embryos were permeabilized in water and cold acetone, incubated in blocking buffer (1% DMSO, 10% goat serum, 0.5% Triton-X in 1X PBS), and rinsed in 1X PBST + 1% DMSO. Primary and secondary antibodies were diluted in 1X PBST + 1% DMSO. The following primary antibodies were used: GFP at 1:500 (Clontech 632381), EphA4a at 1:2000 (a generous gift from David Wilkinson (Irving et al., 1996 (link)), RFP at 1:200 (Millipore AB3216), and DsRed at 1:200 (Clontech 632496). The following secondary antibodies were used: Alexa Fluor 488 (Molecular Probes A11001), Alexa Fluor 546 (Molecular Probes A11010), and anti-GFP Alexa Fluor 488 conjugate (Molecular Probes A21311). Embryos were then cleared in 80% glycerol, deyolked and flat-mounted.
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Fluorescent Imaging of Brain Sections

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Following fixation in 4% paraformaldehyde for at least 2 hours, tissues were stored in 2% sucrose at 4°C until cutting. The brains were coronally sectioned, and after embedding in Tissue-Tek OCT Compound, the tissues were snap frozen in liquid nitrogen. Two 6 μm-thick sections were cut from each brain with a freezing microtome and mounted on Fisherbrand Superfrost Plus glass slides (Fisher Scientific, Pittsburgh, PA, USA). Tissue sections were then fixed in 10% formalin and rinsed in tap water. One set of tissues was stained with H&E and prepared for light microscopy, and the other set was prepared without staining for fluorescent microscopy, using anti GFP Alexa Fluor 488-conjugate (Invitrogen), and Hoechst 33342 (Invitrogen) for counter-staining. Areas of interest were captured on digitized images using a Leica TCS SP5 confocal microscope with the 63× objective and analyzed by ImageJ 1.35s software (public domain; http://rsbweb.nih.gov/ij/).
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4

Immunofluorescence Imaging of Infected Cells

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Infected cells were fixed with 4% paraformaldehyde (PFA) in PBS (Nzytech) for 15 min at room temperature. Fixed cells were permeabilized with 0.2% Saponin (Sigma) in PBS containing 2% BSA (Nzytech), for 30 min at room temperature. Transfected cells were fixed with 4% PFA at room temperature for 10 min, permeabilized with 0.3% Triton X-100 in PBS for 5 min and blocked with 5% BSA in PBS for 1 h at room temperature. For immunostaining, coverslips were incubated with primary antibodies diluted in blocking solution (2 h, room temperature), washed with PBS, incubated for 1 h at room temperature with Alexa fluor-conjugated secondary antibodies (Molecular probes, Invitrogen, Thermo Scientific) and Hoechst 33342 (Invitrogen) and washed again. The coverslips were mounted on microscope slides with Fluoromount G (Invitrogen). For infection quantification by microscopy, parasites were stained with anti-PbHSP70(Tsuji et al., 1994 (link)) or anti-GFP Alexa fluor-488 conjugate (Invitrogen) and imaged on a wide-field microscope equipped with an automated stage (Zeiss Axio observer, 40x Air (0.75), EC Plan-NeoFluar, Axiocam 506 mono-CCD (4.54∗4.54 μm pixel size)). High-resolution images were acquired on point scanning confocal microscopes (Zeiss LSM 880 or LSM 710, 63x Oil (1.04) Plan-Apochromat DIC). All images were processed and analysed using ImageJ/FIJI (Schindelin et al., 2012 (link)).
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