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Accuprep rna extraction kit

Manufactured by Bioneer

The AccuPrep® RNA Extraction Kit is a laboratory tool designed for the isolation and purification of total RNA from various biological samples, including cells, tissues, and microorganisms. The kit utilizes a silica-based membrane technology to efficiently capture and recover high-quality RNA, which can be used for downstream applications such as gene expression analysis, reverse transcription-PCR, and other molecular biology techniques.

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7 protocols using accuprep rna extraction kit

1

Quantitative RT-PCR for Gene Expression Analysis

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Total RNA was isolated using the AccuPrep® RNA Extraction Kit (Bioneer Corp., Korea) and the cDNA synthesized from 1 μg of total RNA using oligo (dT) primers (Bioneer Corp., Korea) and the RocketScriptTM Reverse Transcriptase Kit (Bioneer Corp., Korea). qRT-PCR was performed using ExcelTaq 2X Q-PCR Master Mix (SMOBiO, Taiwan) and the CFX96TM Real-Time System (Bio-Rad, United States). The cycling conditions were as follows: 95°C for 3 min followed by 40 cycles at 95°C for 15°s, 60°C for 30°s, and 72°C for 30°s. The primer sequences are given in Supplementary Table S1 All reactions were run in triplicate, and data were analyzed using the 2−ΔΔCT method (Livak and Schmittgen, 2001 (link)). The internal standard was GAPDH. Significance was determined by the Student’s t-test with GAPDH-normalized 2−ΔΔCT values (Livak and Schmittgen, 2001 (link)).
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2

Transcriptional Analysis of Cartilage and Macrophage Models

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Cartilage tissue-induced OA and LPS-induced RAW264.7 cells were used to extract total RNA by the AccuPrep® RNAExtractionKit (Bioneer, Daejeon, Republic of Korea). CycleScriptTM RT Pre&Master Mix (Bioneer, Daejeon, Republic of Korea) was then used to reverse transcribe the extracted RNA into cDNA in accordance with the manufacturer’s procedure. Using the 2X-GreenStarTM qPCR MasterMix (Bioneer, Republic of Korea), mRNA expression was measured. All tests were conducted three times. The threshold cycle (CT) approach was utilized to ascertain the relative gene expression, whereas the 2−ΔΔCT formula was employed to compute the fold changes. The primer sequences, which were made up of exons, are shown in the tables below (Table 4 and Table 5).
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3

Quantitative RT-PCR Gene Expression Analysis

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Total RNA was isolated using the AccuPrep® RNA Extraction Kit (Bioneer Corp., Daejeon, Korea), and the cDNA was synthesized from 1 μg of total RNA using oligo (dT) primers (Bioneer Corp., Daejeon, Korea) and the RocketScriptTM Reverse Transcriptase Kit (Bioneer Corp., Korea). qRT-PCR was performed using Prime Q-Mastermix (GeNet Bio, Daejeon, Korea) and the CFX96TM Real-Time System (Bio-Rad, Hercules, CA, USA). The cycling conditions were as follows: 95 °C for 3 min followed by 40 cycles at 95 °C for 15 s, 60 °C for 30 s, and 72 °C for 30 s. The primer sequences are shown in Table S1. All reactions were run in triplicate, and data were analyzed using the 2−ΔΔCT method [41 (link)]. The internal standard was GAPDH. Significance was determined by the Student’s t-test with GAPDH-normalized 2−ΔΔCT values [45 (link)].
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4

Quantifying IL-2 Expression in Jurkat Cells

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Jurkat cells were pretreated for 3 h with A.S. extract alone or combined with axitinib or dovitinib, followed by a 1 h incubation with PMA (50 ng/mL) plus PHA (1 μg/mL) in culture media (5% FBS). Total RNA was isolated using the AccuPrep® RNA Extraction Kit (Bioneer Corp., Daejeon, Korea), and cDNA was synthesized from 100 ng total RNA using the iScriptTM cDNA Synthesis Kit (Bio-Rad, Hercules, CA, USA). Quantitative real-time RT-PCR was performed using iQ™ SYBR® Green Supermix (Bio-Rad, Hercules, CA, USA) and the CFX96TM Real-Time PCR System (Bio-Rad, Sacramento, CA, USA). Cycling conditions were as follows: 95 °C for 3 min, followed by 40 cycles of 95 °C for 15 s, 60 °C for 30 s, and 72 °C for 30 s. The following primers were used: IL-2 forward, 5′-ACTTTCACTTAAGACCCAGGGA-3′ and reverse, 5′-AGTGTTGAGATGATGCTTTGACA-3′; GAPDH forward, 5′-GAGTCAACGGATTTGGTCGT-3′ and reverse, 5′-GATCTCGCTCCTGGAAGATG-3′. All reactions were performed in triplicate, and the data were analyzed using the 2−ΔΔCT method [39 (link)].
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5

Quantitative RT-PCR Protocol for Gene Expression Analysis

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Cells were incubated in 60 mm2 dishes for 24 h. Total RNA was isolated using the AccuPrep® RNA Extraction Kit (Bioneer Corp., Korea) and cDNA synthesized from 1 μg of total RNA using oligo (dT) primers (Bioneer Corp., Korea) and the RocketScriptTM Reverse Transcriptase Kit (Bioneer Corp., Korea). qRT-PCR was performed with the ExcelTaq 2X Q-PCR Master Mix (SMOBiO, Taiwan) and CFX96TM Real-Time System (Bio-Rad, USA). The cycling conditions were as follows: 95°C for 3 min followed by 40 cycles at 95°C for 15 s, 60°C for 30 s, and 72°C for 30 s. The primer sequences used in this study are provided in S1 Table. All reactions were run in triplicate, and data were analyzed using the 2−ΔΔCT method [37 (link)]. The internal standard was GAPDH. Significance was determined by the Student’s t-test with GAPDH-normalized 2−ΔΔCT values [37 (link)].
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6

Quantitative Real-Time PCR Analysis of Gene Expression

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Cells were incubated in 60 mm 2 dishes for 24 h. Total RNA was isolated using the AccuPrep® RNA Extraction Kit (Bioneer Corp., Korea) and cDNA synthesized from 1 μg of total RNA using oligo (dT) primers (Bioneer Corp., Korea) and the RocketScript TM Reverse Transcriptase Kit (Bioneer Corp., Korea). qRT-PCR was performed with the ExcelTaq 2X Q-PCR Master Mix (SMOBiO, Taiwan) and CFX96 TM Real-Time System (Bio-Rad, USA). The cycling conditions were as follows: 95°C for 3 min followed by 40 cycles at 95°C for 15 s, 60°C for 30 s, and 72°C for 30 s. The primer sequences used in this study are provided in S1
Table . All reactions were run in triplicate, and data were analyzed using the 2 -ΔΔC T method [31] . The internal standard was GAPDH. Significance was determined by the Student's t-test with GAPDH-normalized 2 -ΔΔC T values [31] .
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7

Quantitative RT-PCR Analysis of IL-6 Response

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Total RNA was isolated from the frozen buffy coat specimens of human MM patients using the NucleoSpin® RNA Blood extraction kit (Macherey-Nagel, GmbH&Co. KG, Germany). RPMI8226 cells were treated with IL-6 (10 ng/mL) in RPMI-1640 medium containing 0.1% FBS for 0 - 60 min. After incubation, the total RNA was isolated from RPMI8226 cells using the AccuPrep® RNA Extraction Kit (Bioneer Corp., Daejeon, Korea) and the cDNA synthesized from 1 μg of total RNA using oligo (dT) primers (Bioneer Corp., Daejeon, Korea) and the RocketScript™ Reverse Transcriptase Kit (Bioneer Corp., Daejeon, Korea). Quantitative real-time RT-PCR was performed using ExcelTaq 2X Q-PCR Master Mix (SMOBiO, Hsinchu, Taiwan) and the CFX96™ Real-Time PCR System (Bio-Rad, Sacramento, CA, USA). The cycling conditions were as follows: 95°C for 3 min followed by 40 cycles at 95°C for 15 s, 60°C for 30 s, and 72°C for 30 s. Table 1 lists the target-specific primer sequences. All reactions were performed in triplicate with GAPDH as an internal standard. The data were analyzed using the 2−ΔΔCT method [29 (link)].
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