iPSCs were always cultured on
Matrigel (Corning, 356237) in E8 flex supplemented with
primocin (0.1 µg/ml; Invivogen, ANT-PM-05) and low puromycin and G418 concentrations (0.5 µg/ml) at 37°C, 5% CO
2. Medium was refreshed every 2–3 days and cells were passaged 1–2 times per week using an enzyme-free reagent (
ReLeSR; Stem Cell Technologies, 05872). For autophagy induction cells were treated with 200 nM
rapamycin (Santa Cruz Biotechnology, sc-3504) for 10 min, before medium was refreshed. To block autophagosome formation or lysosome fusion cells were treated with 200 nM
wortmannin (Invivogen, tlrl-wtm) or bafilomycin A
1 (Millipore, 19–148), respectively prior to
rapamycin treatment. If not mentioned differently, cells were lysed/fixated after 2 h of incubation. For
apocynin (Santa Cruz Biotechnology, sc-20332) rescue experiments iPSCs were plated as single cells. The day after plating the cells were treated for 24 h with 200 µM
apocynin before cells were fixed. To stimulate ROS production cells were treated for 10 min with 100 µM BSO (Sigma-Aldrich, B2515). After medium was refreshed, cells were incubated for 2 h before lysate preparation or fixation.
Linda K., Lewerissa E.I., Verboven A.H., Gabriele M., Frega M., Klein Gunnewiek T.M., Devilee L., Ulferts E., Hommersom M., Oudakker A., Schoenmaker C., van Bokhoven H., Schubert D., Testa G., Koolen D.A., de Vries B.B, & Nadif Kasri N. (2021). Imbalanced autophagy causes synaptic deficits in a human model for neurodevelopmental disorders. Autophagy, 18(2), 423-442.