The largest database of trusted experimental protocols

11 protocols using amino acid standard h

1

Amino Acid Profiling of T. versicolor Biomass

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total nitrogen of the T. versicolor biomass was determined by the Kjeldahl method [45 ]. The total protein content was calculated by multiplying the total nitrogen by 4.38. The result was expressed as a percentage.
The amino acid composition was determined by the method described by Tumbarski et al. [48 (link)]. The lyophilized biomass was subjected to acid hydrolysis using 6N HCl for 24 h at 105 °C. An aliquot of the hydrolysate was derivatised using AccQ-Fluor reagent Kit (Waters). The derivative was separated on RP AccQ-Tag™ silica-bonded amino acid column C18, 3.9 mm × 150 mm (Waters, Etten-Leur, The Netherlands), and conditioned at 37 °C using an ELITE LaChrom HPLC system (VWR™ Hitachi, Tokyo, Japan). A sample of 20 μL was injected and the elution of the amino acids was performed by the following gradient system: eluent A, buffer WAT052890 (Waters, Etten-Leur, The Netherlands) and eluent B, 60% acetonitrile (Merck KGaA, Darmstadt, Germany) with a constant flow rate of 1.0 mL/min. The amino acids were detected using a diode array detector (DAD) at 254 nm. The amino acid peaks were then analyzed using EZChrom Elite™ software [49 ] and the amino acid content was calculated based on the amino acid standard calibration curve (amino acid standard H, Thermo Fisher Scientific, Waltham, MA, USA). The results were expressed as mg AA/g sample and as a percentage [50 (link)].
+ Open protocol
+ Expand
2

Amino Acid Profiling of Olive Pomace

Check if the same lab product or an alternative is used in the 5 most similar protocols
The amino acid content of olive pomace and the LMW peptides (<3 kDa) extracted from olive pomace was determined after hydrolysis in 6 N HCl plus 1% phenol in sealed Pyrex tubes (Corning, NY, USA) at 110 °C for 24 h by high-performance liquid chromatograph (HPLC) according to the Waters Pico Tag method [47 ] as described in [48 (link)], using a Waters 2695 separation module (Waters Corporation, Mildford, MA, USA). L-alpha-amino adipic acid and DL-norleucine were used as internal standards. Pre-column derivatization was carried out with phenyl isothiocyanate. The cysteine and methionine contents were determined as cysteic acid and methionine sulphone, respectively, after oxidation of samples with performic acid prior to the protein hydrolysis step, as described in [49 (link)]. For quantification, seventeen amino acid standards (Amino Acid Standard H, Thermo Fisher Scientific, Waltham, MA, USA), L-Cysteic acid, and L-Methionine sulfone (Sigma-Aldrich, St. Louis, MO, USA) were used at concentrations of 0.1, 0.2, and 0.3 mM. Tryptophan was not determined. A Millennium 32 chromatography manager system was used for gradient control and data processing. Each sample was analysed three times with two technical replicates.
+ Open protocol
+ Expand
3

Amino Acid Analysis by LC-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
1x106 cells or 100 mg tissues were used for amino acid analysis with LC-MS. Cells were washed with 0.9% NaCl, scraped off and centrifuged at 1000 rpm, 4°C for 10 min, after which the pellets were saved for the next step. 100 mg of tissues were weighed and homogenized in liquid nitrogen. The tissue dry powder was collected for the next step. 50% pre-cold Methonal was added for fixation. Then chloroform was added to lyse the cells at 4°C for 30 min on the rotator. The lysates were centrifuged at 14000 rpm, 4°C for 10 min and the top aqueous layer was used as samples for LC-MS analysis with a Sciex API3200 esi-triple quadrupole mass spectrometer coupled with an Agilent 1200 HPLC. 10 μl of each standard and sample was injected into the system. Amino Acid Standard H (Thermo Fisher Cat. # 20088) was used as standard. The MS parameters used are as follows: Ion source (IS) voltage, 5400 v, ion source temperature 450C, collision energy 5v. Analyst 1.5.1 was used for data analysis.
+ Open protocol
+ Expand
4

Amino Acid Profile Assessment in Right Leg

Check if the same lab product or an alternative is used in the 5 most similar protocols
The amino acid profile of the right leg samples was assessed according to the method described by [24 (link)]. In short, a sample (100 mg) in a glass ampoule and 6 N hydrochloric acid solution (5 mL) was mixed, sealed and stored at 110 °C for 24 h. After protein hydrolysis was completed, the hydrolysate was diluted with distilled water (200 mL) and filtered through a 0.45 µm filter (Filter Lab, Barcelona, Spain). Tryptophan content was not determined as it transforms into ammonium under acidic conditions. The derivatization of standards and samples was carried out according to Gálvez et al. [25 (link)]. The identification of amino acids was done through high performance liquid chromatography (Alliance 2695 model, Waters, Milford, MA, USA), using a scanning fluorescence detector (model 2475, Waters) according to Munekata et al. [26 (link)]. The quantification was done using the external standard technique with amino acid standard (Amino Acid Standard H, Thermo, Rockford, IL, USA). The results are expressed as g per 100 g protein.
+ Open protocol
+ Expand
5

Amino Acid Composition Analysis of Frankfurters

Check if the same lab product or an alternative is used in the 5 most similar protocols
Amino acid composition (g/100 g of sample) of frankfurters was determined using the methodology described by Marti-Quijal et al. [33 (link)] by derivatization of amino acids with 6-Aminoquinolyl-N-hydroxysuccinimidyl carbamate (Waters AccQ-Fluor reagent kit) and reversed-phase high-performance liquid chromatography analysis (RP-HPLC) (Waters 2695 Separations Module + Waters 2475 Multi Fluorescence Detector + WatersAccQ-Tag amino acids analysis column). Empower 2 TM advanced software (Waters, Milford, MA, USA) was used to control system operation and results management. Amino acids were identified by retention time using an amino acid standard (Amino Acid Standard H, Thermo, Rockford, IL, USA).
+ Open protocol
+ Expand
6

Amino Acid Analysis Using HPLC

Check if the same lab product or an alternative is used in the 5 most similar protocols
All the employed solvents were HPLC grade (HiPerSolv CHROMANORM®) and purchased from VWR International, Ltd. (Poole, United Kingdom). HCl 0.1 N solution and phenylalanyl-phenylalanine dipeptide, as an internal standard in peptide analysis, were purchased from Sigma-Aldrich (St. Louis, MO, USA), together with all the other amino acids and reagents.
The fluorophore for amino acid derivatization (AccQ*Fluor Reagent kit) was purchased from Waters (Milford, MA, USA), and the mix of standard amino acids for the calibration curve (Amino Acid Standard H) was purchased from Thermo Fischer Scientific (Waltham, MA, USA). In addition, 45 µm filters were purchased from Millipore Co. (Burlington, MA, USA).
+ Open protocol
+ Expand
7

Quantification of Targeted Metabolites by UHPLC-QTOF-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pure standards of five targeted metabolites, namely L-proline, spermine, acetylcarnitine, L-tryptophan and lysophosphatidylcholine (LPC, 18:2) were purchased, as follows:

L-proline (from Amino Acid Standard H product #20088, Thermo Scientific, Waltham, MA, USA). MW = 115.

spermine (>97% product S3256, Sigma-Aldrich Chemie GmbH, St. Louis, MO, USA). MW = 202.

o-acetyl-L-carnitine hydrochloride (J6153606; Alfa Aesar by Thermo Scientific, Waltham, MA, USA). MW = 203.

L-tryptophan (>98.5% (T) (HPLC) (T0541;TCI Chemicals, Portland, OR, USA). MW = 204.

lyso L-α-Lysophosphatidylcholine-LPC(18:2) from bovine brain (CAS nr. 9008-30-4) Sigma-Aldrich Chemie GmbH, St. Louis, MO, USA. MW = 519.

Other reagents such as HPLC-grade methanol, formic acid and acetonitrile were purchased from Sigma-Aldrich Chemie GmbH (St. Louis, MO, USA) and Thermo Fisher Scientific (Waltham, MA, USA). Ultrahigh-purity water was prepared by a Millipore-Q Water Purification System (Millipore, Darmstadt, Germany).
The instruments used in this study included a vortex mixer, Minicentrifuge Eppendorf (Thermo Fisher Scientific, Waltham, MA, USA) and UHPLC-QTOF-MS (Bruker GmbH, Bremen, Germany).
+ Open protocol
+ Expand
8

Chiral amino acid quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
L- and D-amino acid standards were obtained from Sigma-Aldrich (Darmstadt, Germany). Internal standards were purchased as a “cell-free” amino acid mix of 20 stable isotope-labeled amino acids (Cambridge Isotope Laboratories Inc., Andover, MA, USA). The chiral derivatization agent (S)-N-(4-nitrophenoxycarbonyl) phenylalanine methoxyethyl ester (S-NIFE) was obtained from Santa Cruz Biotechnology (Dallas, TX, USA). All solvents for LC–MS analysis were hypergrade (Merch, Darmstadt, Germany). Amino acid standard H (ThermoFisher Scientific, Waltham, MA, USA), an 18 amino acid mix, was used as QC sample. Milli-Q water was used throughout the experiments (Millipore, Darmstadt, Germany).
+ Open protocol
+ Expand
9

HPLC-Based Amino Acid Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Amino acid (AA) profiles were determined according to the procedure described by Vargas-Ramella et al. [23] . The HPLC system used was an Alliance 2695 model equipped with a 2475 scanning fluorescence detector (Waters, Milford, MA, USA). To control the system operation and results management, an Empower 2 TM advanced software (Version 1.04.1037; Waters, Milford, MA, USA) was used. Separations were carried out using a Waters AccQ-Tag column (3.9 × 150 mm, with a 4 mm particle size) with a flow rate of 1.0 mL min-1 at 37 • C. Detection was carried out via fluorescence with excitation at 250 nm and emission at 395 nm. The AAs were quantified using the external standard method using an AA standard (Amino Acid Standard H, Thermo, Rockford, IL, USA) and identified via the retention time. The amount of each AA that was detected was expressed as mg/100 g sample.
+ Open protocol
+ Expand
10

Amino Acid Composition Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acid hydrolysis of ~30 mg freeze-dried samples was done by adding 4 mL of 6 M HCl and incubation at 110 • C for 20 h. The solution was filtered (0.45 μm PES, Fisherbrand) and diluted 20 times with 0.2 M HAc before the amino acid composition was analysed with LC-MS as described by Harrysson et al. (2018) . Quantification was done using Amino Acid Standard H (Thermo Scientific, Rockford, Illinois, USA) as external standard. Results are expressed as the anhydro-amino acid values.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!