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13 protocols using acsl4

1

Immunohistochemical Analysis of Ferroptosis Markers in IVD

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After fixation in 4% paraformaldehyde, the IVD tissues were decalcified, embedded in paraffin, and cut into 5-μm sections. After the paraffin sections were dewaxed with xylene and gradient ethanol, they were antigen-repaired with citric acid (pH 6.0) and blocked with goat serum. Then the sections were incubated with primary antibodies against GPX4 (1:1000, Proteintech), ACSL4 (1:200, Proteintech), ATF6 (1:200, Proteintech), Piezo1 (1:200, Affinity), SelK (1:200, Affinity), Col-2 (1:200, Novus), MMP-13 (1:200, Proteintech) at 4 ℃ overnight. The next day, the sections were incubated with goat anti-rabbit IgG-HRP secondary antibody for 1 h at room temperature. Detection was performed by using the DAB Substrate kit (ZLI-9018, ZSGB) and were counterstained with 1% hematoxylin. Images were captured by a microscope (Leica DMI3000B). The positive areas were quantified by ImageJ.
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2

Immunohistochemical Analysis of Ferroptosis Markers in IVD

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After fixation in 4% paraformaldehyde, the IVD tissues were decalcified, embedded in paraffin, and cut into 5-μm sections. After the paraffin sections were dewaxed with xylene and gradient ethanol, they were antigen-repaired with citric acid (pH 6.0) and blocked with goat serum. Then the sections were incubated with primary antibodies against GPX4 (1:1000, Proteintech), ACSL4 (1:200, Proteintech), ATF6 (1:200, Proteintech), Piezo1 (1:200, Affinity), SelK (1:200, Affinity), Col-2 (1:200, Novus), MMP-13 (1:200, Proteintech) at 4 ℃ overnight. The next day, the sections were incubated with goat anti-rabbit IgG-HRP secondary antibody for 1 h at room temperature. Detection was performed by using the DAB Substrate kit (ZLI-9018, ZSGB) and were counterstained with 1% hematoxylin. Images were captured by a microscope (Leica DMI3000B). The positive areas were quantified by ImageJ.
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3

Oridonin and Ferrostatin-1 Protocols

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Oridonin (HPLC ≥98%) was purchased from Shanghai yuanye Bio-Technology Co., Ltd. (#B20310), then the drug was dissolved in DMSO and stored in − 20 °C for usage. Ferrostatin-1 (Fer-1) was purchased from MedChemExpress (#HY-100579, MCE), and stored in − 20 °C for usage. All primary antibody used in the experiments included Actin (1:10000, #60008–1-Ig, Proteintech), Bcl-2 (1:1000, #61193, Proteintech), BAX (1:5000, #50599–2-Ig, Proteintech), cl-caspase3 (1:10000, #19677–1-AP, Proteintech), Tublin (1:1000, #66031–1-Ig, Proteintech), GAPDH (1:2000, #CL594–60004, Proteintech), GPX4 (1:5000, #67763–1-IG, Proteintech), SLC7A11 (1:1000, #26864–1-AP, Proteintech), FTH1 (1:5000, #11682–1-AP, Proteintech), and ACSL4 (1:10000, #81196–1-RR, Proteintech), they were stored in − 20 °C for usage. Ferrostatin-1 (Fer-1) (#HY-100579, MCE), an effective ferroptosis inhibitor [32 (link)], was dissolved in dimethylsulfoxide (DMSO) to create stock solutions and stored at − 20 °C.
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4

Western Blot Analysis of Ferroptosis Regulators

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Cells were lysed with RIPA (R0020, Solarbio, Beijing) containing Protease and Phosphatase Inhibitor Cocktail (P002, NCM Biotech, Suzhou) and collected for centrifugation. The steps in this laboratory are described in the previous article about Western experiments. Antibodies used are as follows: FAM60A (1:1,000, Novus, H00058516-B02P), GPX4 (1:1,000, Proteintech, 67763), ACSL1 (1:1,000, Proteintech, 13989), ACSL4 (1:1,000, Proteintech, 22401), PPARA (1:1,000, Proteintech, 15540), PPARG (1:1,000, Proteintech, 16643), YY1 (1:1,000, CST, #46395), MST1 (1:1,000, CST, #14946), p-MST1/2 (1:800, Abcam, ab79199), YAP (1:1,000, CST, #14074), p-YAP (1:700, CST, #13008), p-LATS1 (1:1,000, CST, #9157), LATS1/2 (1:1,000, Bethyl Laboratories, Montgomery, TX), and ACTB (1:1,000, Abways, AB0035).
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5

Western Blotting Protein Analysis Protocol

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Prior to western blotting, the protein concentration of the samples was determined by the Bradford assay method54 (link). Equal amounts of 20 μg protein per sample were separated by SDS-PAGE on an 8–12% polyacrylamide gel. Proteins were subsequently transferred to PVDF membranes (Immun-Blot PVDF, Bio-Rad, Hercules, CA, USA), and membranes were blocked with 5% (w/v) skim milk in Tris-buffered saline with 0.1% Tween 20 (TBS-T) for 1 h at room temperature. The following antibodies were used: ACSL4 (1:1000), ADPR (1:1000), CYP1A2 (1:1000), FTCD (1:1000), FBXO2 (1:300) and UGT2B7 (1:100) from Proteintech (Rosemont, IL, USA); PKM2 (1:1000) and GFPT1 (1:1000) from Cell Signaling (Danvers, MA, USA); PCK2 (1:1000) from Abcam (Cambridge, MA, USA). These primary antibodies were diluted in 5% (w/v) skim milk in TBS-T and incubated with membranes overnight at 4 °C. After washing for five minutes in TBS-T three times, horseradish peroxidase-labelled secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA) were used for detection for 1 h at room temperature. Visualization of the immunoreactive proteins was accomplished using enhanced chemiluminescence (SuperSignal West Pico, Thermo, Rockford, IL, USA) followed by exposure to X-ray film (XBT, Carestream, Xiamen, Fujian, China).
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6

Non-Small Cell Lung Cancer Cell Culture

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Human non-small lung cancer A549 cells, H1299 cells were purchased from American Type Culture Collection (Rockville, MD, USA). A549 cells were grown in Dulbecco Modified Eagle Medium (Capricorn Scientific, Ebsdorfergrund, Germany) supplemented with 10% fetal bovine serum (Capricorn Scientific, Ebsdorfergrund, Germany) and 1% penicillin/streptomycin solution (Capricorn Scientific, Ebsdorfergrund, Germany). H1299 cells were grown in Roswell Park Memorial Institute with l-glutamine media (RPMI, Capricorn Scientific, Ebsdorfergrund, Germany). The cells were maintained in the monolayer at 37 °C in a humidified atmosphere with 5% CO2.
Ferrostatin-1 (Cat# S7243), RSL3 (Cat# S8155) were purchased from Selleck Chemicals (Houston, USA). 3-(4, 5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT, Cat# M1415) was purchased from Duchefa Biochemie (Harrlem, Netherlands). PrimeScript RT Master mix (Cat# RR036) and TB Green (Cat# RR430) were purchased from TAKARA (Shiga, Japan). The primary antibodies against GAPDH (Cat# 5174) and SLC7A11 (Cat# 12691) were purchased Cell Signaling Technology (Massachusetts, USA). NRF2 (Cat# 16396), FSP1 (Cat# 20886) and ACSL4 (Cat# 22401) were purchased from Proteintech (Rosemont, USA). 4-hydroxynonenal (4-HNE, Cat# ab46546) was purchased from Abcam (Cambridge, UK).
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7

Analyzing Protein Expression Levels

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SLC7A11 (#26864-1-AP), GPX4 (#67763-1-Ig), and ACSL4 (#22401-1-AP) antibodies were purchased from Proteintech (Rosemont, IL, USA). Using the Micro BCA Protein Assay Kit (#23235, Thermo Fisher Scientific, Waltham, MA, USA), the protein concentration of each group was adjusted as indicated. Polyacrylamide gel electrophoresis was performed at 120 V for 90 min and 300 mA for 1 h. After transferring to a polyvinylidene difluoride membrane, it was blocked with 5% skim milk for 2 h. Subsequently, the membrane was incubated with the primary antibody (1:2000) for 9 h. Next, the secondary antibody dilution was prepared and the membrane was incubated at 23 ℃ and slowly shaken with the solution for 40 min. After washing the membrane with PBS/0.1% Tween, the chemiluminescence signals were detected.
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8

Spinal Cord Neuronal Protein Analysis

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Total protein was extracted from primary spinal cord neurons using Total Protein Extraction Kit (Solarbio). BCA‐100 Protein Quantitative Analysis Kit (Biocolors, Shanghai, China) was used to estimate the concentration of proteins. Equivalent protein samples (25 μg) were separated by 10% SDS/PAGE. The separated samples were transferred onto nitrocellulose membrane (Merck Millipore, Billerica, MA, USA). The membranes were blocked with 5% nonfat milk at room temperature for 2 h and then incubated with the primary antibodies, PTGS2 (1 : 1000; Proteintech, Wuhan, China), GPX4 (1 : 1000; Proteintech), ACSL4 (1 : 3000; Proteintech), AKT (1 : 1000; Proteintech), p‐AKT (1 : 2000; Proteintech), Nrf2 (1 : 1000; Proteintech), HO‐1 (1 : 1000; Proteintech) or β‐actin (1 : 2000; Proteintech) overnight at 4 °C. After washed with Tris‐buffered saline Tween for several times, the membranes were incubated with horseradish peroxidase‐conjugated secondary antibody (1 : 5000; Proteintech) at room temperature for 1 h. The data were analyzed by ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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9

Immunohistochemical Analysis of IVD Markers

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The IVD tissues were decalcified, embedded in paraffin, and cut into 5 m slices after being fixed in 4% paraformaldehyde. The paraffin slices were antigen-repaired with citric acid (pH 6.0), blocked with goat serum, and dewaxed with xylene and gradient ethanol. The sections were then treated at 4 °C for an overnight period with primary antibodies to ACSL4 (1:200, Proteintech, USA), Collagen II (1:200, Novus, USA), Aggrecan (1:500, Servicebio, China), and Piezo1 (1:200, Affinity, USA). The sections were exposed to goat anti-rabbit IgG-HRP secondary antibody for 1 h at room temperature the next day. The DAB Substrate kit (ZLI-9018, ZSGB) was used for detection, and the samples were then counterstained with 1% hematoxylin. Using a microscope (Leica DMI3000B, Germany), pictures were recorded. ImageJ quantified the areas that were positive.
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10

Genetic Manipulation and Pharmacological Modulation of Cellular Pathways

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Antibodies against Flag (ShanghaiGenomics), β-actin (Genescript), GPX4 (Abcam), ACSL4 (Proteintech), ERK (CST), p-ERK (CST), NRF2 (Abcam) were purchased commercially.
Full-length cDNA of D2HGDH and IDH1 was amplified by PCR and cloned into indicated pBabe and pQCXIH. Point mutations for IDH1 were generated by site-directed mutagenesis and verified by Sanger sequencing.
AG-120 (CSNpharm), IDH-889 (DC Chemicals), erastin (MedChemExpress, MCE), RSL3 (MCE), Deferoxamine mesylate (MCE), Ferrostatin-1 (Selleck Chemicals), (2 R)-2-Hydroxyglutaric Acid Octyl Ester Sodium Salt, and (2S)-2-Hydroxyglutaric Acid Octyl Ester Sodium Salt (Toronto Research Chemicals) were purchased commercially.
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