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5 protocols using y011054

1

Protein Expression Analysis in Tissues

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Target tissue samples or cells were homogenized in ice-cold RIPA lysis buffer containing 1% protease inhibitor for 30 min. The lysates were centrifuged, and the supernatants were then recovered. The protein concentrations were measured with a bicinchoninic acid protein assay kit. The protein samples were then applied for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were transferred to a polyvinylidene fluoride membrane. The membranes were firstly blocked with 5% non-fat milk and then hybridized with the following antibodies: α-SMA (55135-1-AP; Proteintech, Wuhan, China), collagen I (66761-1-Ig, Proteintech), E-cadherin (20874-1-AP, Proteintech), vimentin (10366-1-AP, Proteintech), OGN (A07061, Boster, Pleasanton, CA, USA), p-mTOR (ab109268, Abcam), mTOR (ab2732, Abcam), Akt (Y409094, ABM, New York, NY, USA), p-Akt (Y011054, ABM) at 4 °C overnight. Horseradish peroxidase-conjugated secondary antibodies and ECL were used for detection and the protein expression was normalized to that of β-actin.
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2

Tumor Tissue Analysis: Immunohistochemistry

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Fresh tumor tissues from nude mice were fixed in formalin at room temperature for 24 h; then, the tissues were dehydrated with an ethanol and acetone series, embedded in paraffin, and sectioned onto glass slides at 4 μm. The slides were stained with hematoxylin and eosin (H&E) following deparaffinization. For IHC (immunohistochemistry), the sections were incubated at 65°C for 2 h and hydrated in xylene and graded ethanol. Then, the sections were immersed in a citrate buffer solution, heated in a microwave oven for 2.5 min, kept 5 min at room temperature, and heated in a microwave oven for 24 min. After washing with PBS (Phosphate Buffer Solution) three times, the slides were incubated with a blocking buffer for 10 min and then with a primary antibody overnight at 4°C. Primary antibodies include a rabbit antibody against vimentin (1:5,000; Proteintech, 10366-1-AP), the E-cadherin rabbit polyclonal antibody (1:1000; Proteintech, Wuhan, China, 20874-1-AP), p-AKT antibody (1:50; Y011054, abm, Richmond, BC, Canada), and AKT (1:200; Y409094, abm, Richmond, BC, Canada). After washing with Phosphate Buffer Solution, the sections were incubated with a secondary antibody, detected with DAB (diaminobenzidine), and counterstained with hematoxylin. Positive staining was deemed as brown dots.
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3

Quantitative Protein Expression Analysis

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Extract total protein from target cells, separate the total protein samples using SDS-PAGE, and transfer the protein samples to polyvinylidene fluoride membranes. For the blockage of nonspecific binding, the membranes were incubated with 5% skim milk dissolved in diphenyltris buffer saline for 2 h at room temperature. Incubate the membranes with the primary antibodies against RNF139 (Catalog # MBS421811; MyBioSource, Inc., San Diego, CA, USA), PI3K (AF6241; Affinity, Cincinnati, OH), p-PI3K (AF3242, Affinity), Akt (Y409094; ABM, Richmond, Canada), or p-Akt (Y011054, ABM) overnight at 4 °C. The incubation with the primary antibodies was followed by another incubation with the corresponding horseradish peroxidase coupled secondary antibody for 2 h at room temperature. Finally, the enhanced chemiluminescence visualization scan was performed.
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4

Protein Expression Analysis by Western Blot

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The extracted proteins from tissues or cells were resolved by sodium dodecyl sulfate - polyacrylamide gel electrophoresis gradient gel (5% spacer gel and 10% or 15% separation gel). After electrophoresis, samples were transferred to a polyvinylidene fluoride membrane, blocked at room temperature for 1 h with 5% milk, and incubated with a primary antibody at 4˚C overnight. Primary antibodies include a rabbit antibody against vimentin (1:2,000; Proteintech, 10366-1-AP), E-cadherin rabbit polyclonal antibody (1:2,000; Proteintech, 20874-1-AP), GAPDH rabbit polyclonal antibody (1:6,000; Proteintech, 10494-1-AP), GAPDH (glyceraldehyde-3-phosphate dehydrogenase) mouse monoclonal antibody (1:6,000; Proteintech, 60004-1-Ig), p-AKT antibody (1:1000; Y011054, abm, Richmond, BC, Canada), and AKT (1:1,000; Y409094, abm, Richmond, BC, Canada). The membranes were washed with a buffer three times, incubated with an HRP-conjugated anti-rabbit IgG (1:10,000; #14708, CST, USA) or anti-mouse IgG (H+L) (1:10000; CST, #14709, Shanghai, China) at room temperature for 2 h, and visualized with an ECL (Enhanced Chemiluminescence) kit (NCM Biotech, China).
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5

Protein Expression Analysis Using Western Blot

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RIPA buffer (Catalog number: P0013C; Beyotime) and protease inhibitors were used to obtain total protein from either target tissues or transfected cells or untransfected target cells. The protein concentration was established by the BCA quantitative method (Catalog number: P0012, Beyotime). Then the protein samples were loaded into SDS‐PAGE (8%–15%) for separation and transferred to PVDF membrane. By incubating the membrane with a 5% milk blocking solution for 1 h, non‐specific binding prevention could be achieved. Then the membrane was incubated with anti‐CERCAM (1:500, 16411–1‐AP; Proteintech), anti‐PCNA (1:2000, 10205–2‐AP, Proteintech), anti‐Vimentin (1:2000, 10366–1‐AP, Proteintech), anti‐Twist (1:500, CSB‐PA025358LA01HU; Cusabio), anti‐N‐cadherin (1:2000, 22018–1‐AP, Proteintech), anti‐E‐cadherin (1:5000, 20874–1‐AP, Proteintech), anti‐Akt (Y409094, Abm), anti‐p‐Akt (1:500, Y011054, Phospho‐ser473; Abm), or anti‐β‐actin (1:5000, 60008–1‐Ig, Proteintech) at 4°C for 24 h, and then incubated with the matching secondary antibody at 37°C for 1 h. Enhanced chemiluminescence (ECL) reagents and Automatic chemiluminescence imaging system (Tanon 5200) were used to visualize proteins. Experiments were repeated for 3 times.
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