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4 protocols using parthenolide

1

Inflammatory Pathway Inhibition Assay

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Parthenolide (pan-inflammation inhibitor: NFκB, AP-1, and NALP3 inflammasome pathway inhibitor) and ACHP (NFκB specific inhibitor) were purchased from TOCRIS (0610, 4547, Bristol, UK). Indomethacin (COX1/2 inhibitor) was purchased from Sigma-Aldrich (I7378, St. Louis, MO, USA). CLI-095 (TLR4 inhibitor) was purchased from InvivoGen (tlrl-cli95, San Diego, CA, USA). Fluoranthene was obtained from AccuStandard (H-118N, purity 97.2%, New Haven, CT, USA) and 1-methylanthracene from Crescent Chemical (DRE-C20834900, purity 99.5%, Islandia, NY, USA). Glyburide (Glybenclamide; NLRP3 inhibitor) was purchased from Novus (NBP2-30141, Centennial, CO, USA). All inhibitors and PAH were dissolved in DMSO (Thermo Fischer Scientific, Waltham, MA, USA), as done previously [36 (link),37 (link),40 (link)]. Recombinant mouse TNF-alpha (rTNF) was purchased from R&D systems (410-MT, Minneapolis, MN, USA).
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2

Inhibition of NF-κB Pathway

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The kinase inhibitor of NF-κB-1 (KINK-1; 5 μM), IKKβ inhibitor, was procured from MedChemExpress (Monmouth Junction, NJ, USA). The cycloheximide (CHX; 5 µM) was purchased from Sigma-Aldrich (St. Louis, MO, USA) and MG132 (10 Μm) was procured from Selleck Chemicals (Houston, TX, USA). The parthenolide (5 μmol/L), p65 inhibitor was purchased from Tocris Bioscience (Ellisville, Missouri, USA). LPS used for this study was obtained from Sigma-Aldrich (Saint-Louis, Missouri, USA).
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3

NF-κB Inhibitory Activity Assay

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NF-κB inhibitory activity was assessed using a HEK293/NF-κB-luc cell line as previously described [26 (link)]. Briefly, cells were incubated 1 h in FBS-free medium with 2.5 µM of Cell Tracker Green CMFDA (Thermo Fisher Scientific), a fluorescent dye used to measure cell viability, and seeded in 96-well plates (104 cells/well). After an overnight incubation, cells were treated with patulin or vehicle only (0.5% DMSO in culture medium) and stimulated with TNF-α (20 ng/mL) (Sigma-Aldrich) for 5 h. Then, the cells were lysed with reporter lysis buffer (Promega, Madison, WI, USA) and both fluorescence of the Cell Tracker Green CMFDA and luminescence of the firefly luciferase were read on a Cytation 3 imaging multimode reader (Biotek, Winooski, VT, USA). The luminescence signal was normalized by the fluorescence signal for each well, and relative NF-κB activity was quantified by comparing the normalized luminescence signal of sample-treated cells with the vehicle-treated cells. Nonlinear regression (with sigmoidal dose response) was used to calculate the IC50 values using GraphPad Prism 6.05. Each compound was tested in duplicate and three independent experiments were performed. Parthenolide (Tocris Bioscience, Bristol, UK) was used as a positive control. Extracts and fractions were screened at 20 μg/mL. Patulin dose–response curve started at 10 μM.
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4

Investigating the Role of miR-21-3p in Caco-2 Cell Inflammation

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Caco-2 cells were treated with TNF-α (Sigma, United States) at final concentrations of 0, 50, 100, and 150 ng/ml, respectively. In some experiments, Caco-2 cells were stimulated with parthenolide (p65 inhibitor, purchased from TOCRIS) at a final concentration of 5 μmol/L.
Caco-2 cells were transfected with miRNAs or plasmid using Lipofectamine 2000 reagent (Invitrogen). The miR-21-3p mimic (HmiR-SN0315), miR control (CmiR-SN0001-SN), miR-21-3p inhibitor (HmiR-AN0315-SN-10), and miR inhibitor control (CmiR-AN0001-SN) were purchased from FulenGen (Guangzhou, China). The sequence of siRNA that specifically targeted MTDH was chemically synthesized by Sangon (Shanghai, China) (forward: GCA​AUU​CCU​UGG​AUC​UUA​UTT, reverse: AUA​AGA​UCC​AAG​GAA​UUG​CTT).
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