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3 protocols using lumican

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Immunofluorescence Analysis of Tendon Markers

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Human biopsies from Achilles tendon (grant No.: 166-08) as well as mouse whole foot were embedded in paraffin and cut in 6 μm thick longitudinal sections. Prior to staining, slides were deparaffinated with xylol and rehydrated via ethanol (100–50% EtOH). For antigen retrieval, sections were treated with 0,2% hyaluronidase for 30 min. Following blocking with 1% BSA/PBS for 2 h sections were incubated overnight at 4 °C with primary antibodies against asporin, fibromodulin, lysyl oxidase (All Abcam), lumican (Santa Cruz, Dallas, USA) and Tnmd (Docheva et al., 2005 (link)). Corresponding Alexa Fluor 488-labeled secondary antibodies and nuclear dye 4′, 6-diamidino-2-phenylindole (DAPI) (both Life technology, Carlsbad, USA) were applied at room temperature for 1 h and 5 min, respectively. Photomicrographs were taken with an Axiocam MRm camera on Observer Z1 microscope (Carl Zeiss, Oberkochen, Germany). Confocal photomicrographs of Tnmd staining in human and mouse Achilles tendon were taken using a confocal Leica TSC SP2 microscope (Leica, Wetzlar, Germany). Immunofluorescence experiments were repeated thrice independently.
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2

Epidermis Separation and Protein Analysis

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Epidermis was enzymatically digested with dispase and physically separated from dermis using tweezers. Purified cells were lyzed and analyzed by immunoblot analysis with the following antibodies: NF1 (Santa Cruz; H-12, 1:100); K1 (BioLegend, 905601, 1:1000); LUMICAN (Santa Cruz; sc-166871, 1:200). All western blot were repeated in three biological replicates. See Supplementary Figure 1 for uncropped blots related to Fig. 2d.
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3

Western Blotting: Protein Analysis

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Western blotting was performed by using antibodies against the following proteins: Akt (Cell Signaling, 9272; 1:1000),
phospho-Akt (Cell Signaling, 9271S; 1:1000), apolipoprotein-A1 (Novus, NB600-609; 1:1000), β-actin (Santa Cruz
Biotechnology, sc-47778; 1:1000), β-catenin (BD Biosciences, 610153; 1:1000), Erk (Cell Signaling, 9102S; 1:1000),
phospho-Erk (Cell Signaling, 4370S; 1:1000), GAPDH (Millipore, MAB374; 1:1000), galectin-1 (Abcam, ab138513; 1:1000), IRS2
(LifeSpan BioSciences, LS-C33930; 1:1000), phospho-IRS2 (Novus, NBP1-72215; 1:1000), lumican (Santa Cruz Biotechnology, sc-33785;
1:1000) and TATA binding protein (TBP) (Cell Signaling, 8515S; 1:1000). Fractionation of cells into nuclear and cytoplasmic
content was performed with the NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo Scientific) supplemented with Protease
Inhibitor Cocktail (Thermo Scientific) as we described [42 ].
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