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6 protocols using ab8366

1

Histological Evaluation of New Bone Formation

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After micro-CT scanning, samples were dehydrated and made transparent using dimethylbenzene (Sinopharm Chemical Reagent Co., Ltd.). They were then embedded in wax and sectioned into 6 µm coronal planes. Sections were stained with hematoxylin and eosin (H&E) and observed under a light microscope (Leica Microsystems GmbH, Wetzlar, Germany). Image-Pro Plus 6.0 software (Media Cybernetics, Inc., Rockville, MD, USA) was used to evaluate new bone formation at ×100 magnification in six randomly selected fields per section. Bone density was defined as the ratio of new bone area to total area. The border of the new bone and osteoid tissue was difficult to define, so osteoid tissue was not included in new bone calculations.
Immunohistochemistry was performed using antibodies specific for CD31 (1:200; ab24590; Abcam) and HIF-1α (1:100; ab8366; Abcam). In brief, these sections were rehydrated and incubated with primary antibodies at 4°C overnight, then incubated with biotinylated secondary IgGs (1:500; BA1001; Wuhan Boster Biological Technology, Ltd., Wuhan, China). Sections were treated with ABC complex and developed with 3,3′-diaminobenzidine (both Wuhan Boster Biological Technology, Ltd.), then stained with hematoxylin. All sections were consistently maintained in liquid, and sections incubated without primary antibodies were used as a control.
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2

HIF1α Co-Immunoprecipitation in HEK293 Cells

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HEK293 cells were grown to 70% confluence in 6-well plates and then transfected with GPD1 or negative control plasmids for 24 h. Cell lysates were prepared for Co-IP analysis (#88805, Thermo Fisher Scientific). Briefly, beads were prewashed two times with 1× modified coupling buffer and then incubated with 5 μg of HIF1α antibody (ab8366, Abcam) for 15 min. After that, the beads were washed three times with 1× modified coupling buffer, and the antibody was crosslinked in 1 ml of disuccinimidyl suberate solution for 30 min. Then, the beads were washed three times with elution buffer, followed by two IP lysis/wash buffer washes. After that, the cell lysates were incubated with the beads for 8 h at 4 °C. The next day, the beads were washed twice with 1 ml of IP lysis/wash buffer, followed by a final wash with ultrapure water. The bound antigen was finally eluted and prepared for western blotting analysis.
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3

Immunohistochemical Analysis of Hypoxia Markers

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Resected specimens were entirely formalin-fixed, and samples were mapped. For each tumour, one representative section was immunostained, and for each section, one tumour paraffin-embedded block was chosen for immunohistochemical analysis. Mapping, section and block selection were defined jointly by the same pathologist and nuclear physician for all patients based on PET data. Particular attention was paid to obtain the best correlation between immunohistochemistry and PET from the orientation of the surgical specimen to the section. Slides were immunostained using the following primary antibodies as hypoxia markers: Anti-HIF1-Alpha (1:500; ab8366; Abcam®, Cambridge, UK), anti-GLUT-1 (1:250), anti-CAIX (1:50), and anti-LDH-5 (1:1000). Deparaffinisation, antigen retrieval, and immunostaining were performed using a Benchmark ULTRA® device (Ventana-Roche®; Oro Valley, Arizona, USA). Slides were heated to 72 °C, incubated for 30 min with the antibody, and then rinsed in buffer solution. Primary antibody detection was performed using Ultraview DAB solution (Roche-Ventana®; Oro Valley, Arizona, USA). After rinsing, a drop of haematoxylin solution was applied within 4 min for counter-staining, before rinsing again. Finally, the slides were mounted with a glass coverslip.
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4

Immunohistochemical Analysis of Tumor Markers

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Tumours were fixed in 10% formaldehyde solution and embedded in paraffin. Immunohistochemical staining was performed on 4-μm tumour sections. We used the automatic Bond III system and Bond Polymer Refine Detection (DS 9800; Leica Biosystems). Endogenous peroxidase activity was blocked by incubation with peroxide block solution. The primary antibodies used were anti-Hif-1α (ab8366, AbCam), anti-Ki-67 (clone MIB-1, Dako) and anti-PECAM1 (CD31; Santa Cruz biotechnology).
Micro-vessel density was evaluated with anti-PECAM1 using the method of Weidner et al.52 (link). Micro-vessel density score was calculated as the mean of five areas. Proliferative activity was evaluated with anti-Ki-67. The percentage of positive tumour cells was calculated using four fields. All specimens were examined blindly by two pathologists.
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5

Bone-Derived Endothelial Cell Iron Assay

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BECs were cultured from male and female bones separately and treated with vehicle (DMSO) or 17β-Oestradiol for 60 hrs before the assay. BECs were collected by trypsinisation and centrifugation and lysed by sonication, and resuspended in iron assay buffer (Abcam, ab8366.) The assay was performed as per manufacturer guidelines for the Iron (II) assay with OD measured at 593 nm and Iron (II) content determined by a standard curve.
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6

Bone-Derived Endothelial Cell Iron Assay

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BECs were cultured from male and female bones separately and treated with vehicle (DMSO) or 17β-Oestradiol for 60 hrs before the assay. BECs were collected by trypsinisation and centrifugation and lysed by sonication, and resuspended in iron assay buffer (Abcam, ab8366.) The assay was performed as per manufacturer guidelines for the Iron (II) assay with OD measured at 593 nm and Iron (II) content determined by a standard curve.
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