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8 protocols using vecad

1

Immunocytochemistry of Stem Cell Markers

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The cells were washed with PBS, fixed in 4% formaldehyde at RT for 15 min, and permeabilized with 0.1% Triton X-100 in PBS at RT for 20 min. After blocking with 4% normal donkey serum (Abcam, Cambridge, UK) at RT for 1 h, the samples were incubated at 4 °C overnight with primary antibodies against OCT4 (R&D Systems, 1:300), NANOG (Abcam, 1:300), SSEA-4 (R&D Systems, 1:300), Tra-1-81 (Millipore, Billerica, MA, 1:300), Tra-1-60 (Millipore, 1:300), TSP-1 (Santa Cruz Biotechnology, 1:300), KDR (Cell Signaling Technology, 1:400), VECAD (Abcam, 1:400), or Gb3 (GeneTex, Irvine, CA, 1:100) diluted with blocking solution. After rinsing several times with PBST (0.1% Tween-20 in PBS), the samples were incubated with Alexa-488- or Alexa-594-conjugated secondary antibodies (Invitrogen) at RT for 1 h. Then, the cells were counterstained with 4′-6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich) and visualized on a fluorescence microscope (Olympus, Tokyo, Japan) or a Zeiss LSM 510 confocal microscope (Carl Zeiss, Oberkochen, Germany).
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2

Quantitative Immunofluorescence Assay

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The transfected cells were plated into 96-well plates at a density of 4000 cells/well. The cells were fixed with ice-cold methanol and blocked with serum. The primary antibodies of VEGFR1, VEGFR2, and VE–Cad (Abcam, USA) were used at a 1:100 work solution. Fluorescein isothiocyanate- and tetramethyl rhodamine isothiocyanate-conjugated mouse and rabbit IgG antibodies (Santa Cruz Biotechnology, USA) were used to label immunofluorescence. After immunolabeling, the cells were stained with Hoechst (Sigma, Germany) and measured with high-content screening (HCS) systems to evaluate the protein expression (Thermo Scientific, USA).
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3

Phenotypic Characterization of EPCs

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For characterizing the EPCs surface markers after collecting from the cell culture, the EPCs were immunostained for 30 min on ice with the following antibodies: PE-conjugated antibodies against CD133 (BD Pharmingen), Sca-1 (BD Pharmingen), and CD34 (BD Pharmingen); Fluorescein isothiocyanate (FITC)-conjugated antibodies against c-kit (BD Pharmingen); Monoclonal antibodies against CD31 (Abcam), VEGF (Abcam), KDR (Thermo); and vascular endothelial cadherin (Ve-Cad) (Abcam). Cells labeled with non-fluorescence-conjugated antibodies were further incubated with Alexa Fluor 488-conjugated antibodies specifically against mouse or rabbit IgG (Invitrogen). Isotype-identical antibodies (IgG) served as controls. Flow cytometric analyses were performed by utilizing a fluorescence-activated cell sorter (Beckman Coulter FC500 flow cytometer). The results showed that c-Kit +/CD31 + , Sca-1 +/CD31 + , vascular endothelial cadherin (Ve-Cad) +/CD34 + and KDR +/CD34 + cells were the four dominant EPCs to be utilized together in the current study.
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4

Immunohistochemical Analysis of Fabry Disease

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Biopsied samples from 11 FD patients and 11 donors were used for this study, which was approved by the AMC Institutional Review Board (2016-0768). Renal biopsy tissues were obtained at Asan Medical Center (AMC) from FD patients from 2003 to 2018 and from normal donors in 2017. Formalin-fixed paraffin-embedded (FFPE) renal samples were cut into 4 μm-thick slices and immunostained using the Ventana Benchmark XT Automated Staining System (Ventana Medical Systems, Tucson, AZ) according to the manufacturer's protocol. The antibody information and dilution conditions are as follows: TSP1 (Abcam, 1:100); NOS3 (Santa Cruz Biotechnology, 1:100); ANG2 (BIOSS Antibodies, Woburn, MA, 1:50), KDR (Cell Signaling Technology, 1:400), and VECAD (Abcam, 1:400). The intensity of the staining for each respective marker was evaluated in the endothelial cells of peritubular capillaries. The intensity of the staining was arbitrarily scored on a scale of 0–3. The number of cells expressing each marker was counted and scored using the following formula: Score = (0 × No. of cells with intensity 0) + (1 × No. of cells with intensity 1) + (2 × No. of cells with intensity 2) + (3 × No. of cells with intensity 3) in two high power fields (× 400).
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5

Immunohistochemical Profiling of Tumor Angiogenesis

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IHC was performed to detect the expression levels of different proteins. Tissue sections were deparaffinized in xylene and rehydrated by gradient alcohol prior to IHC. Endogenous peroxidase activity was blocked by incubation with 3% hydrogen peroxide in methanol for 30 min. The tissue sections were heated using 0.01 M citric acid buffer for 10 min in a microwave oven. The slides were stained with antibodies against Twist1 (1:100, Santa Cruz Biotechnology), TP (1:100, Abcam), VE–cad (1:50, Abcam), VEGFR1 (1:250, Abcam), VEGFR2 (1:50, Abcam), or CD31 (1:50, Abcam). After incubation with horseradish peroxidase-conjugated goat anti-rabbit/mouse immunoglobulin G (IgG), the sections were stained with 3,3′-diaminobenzidine and counterstained with hematoxylin or periodic acid–Schiff (PAS). Finally, the sections were dehydrated and mounted. IHC staining was scored by multiplying the positive degree (0 for none, 1 for weak brown, 2 for moderate brown, and 3 for strong brown) and positive rate (1 for 0–25%, 2 for 25%–50%, 3 for 50%–75%, and 4 for 75%–100%). Sections with staining indices >6 were classified to the high-expression group. PAS-positive channels without CD31 staining were classified to the VM group. Five random ×40 fields per HCC tissue were scored with morphology consistent with mimicry. All quantification experiments were performed in a blinded setting.
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6

Induced Endothelial Cell Differentiation

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iEC differentiation induction was performed using a previously established protocol.29 (link) Briefly, on day 1 of the differentiation, hiPSCs were treated with a 1:1 mixture of DMEM to F12 with Glutamax and Neurobasal media supplemented with N2 (1%, Life Technologies, USA), B27 (2%), CHIR (8 μM) and bone morphogenic protein 4 (25 ng/ml, R&D Systems, USA). On day 4, the media was replaced with StemPro-34 SFM medium (Life Technologies, USA) supplemented with vascular endothelial growth factor (200 ng/ml, PeproTech), and forskolin (2 μM, Sigma-Aldrich, USA) with media being renewed again on day 5. At the end of day 6, the cells were sorted against vascular endothelial cadherin (VE-Cad) (Abcam, United Kingdom) with magnetic assisted cell sorting (MACS) using a Dynamag magnet (Invitrogen, USA). iECs were then cultured on fibronectin coated tissue culture flasks in endothelial growth media 2 (Lonza, Switzerland, EGM-2).
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7

Immunofluorescence Staining of Microvessel Network

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Prior to immunofluorescence staining, nonspecific binding was blocked with 2% bovine serum albumin (BSA)/0.5% Triton X-100 for 1 h. Staining for CD31 (Abcam), VE-cadherin (VE-cad; Abcam), von Willebrand Factor (vWF; Abcam), and α-smooth muscle actin (αSMA; Thermo Fisher Scientific) was accomplished through perfusion of immunofluorescence reagents through the microvessel network as described previously [53 (link)]. Secondary antibodies with fluorochromes Alexa Fluor 488, 567, or 647 were used. Vessels were imaged on a Nikon A1R confocal microscope.
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8

Immunofluorescence Staining of Cardiac and Embryonic Tissues

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Chick and mouse hearts and mouse embryos were fixed in 4% paraformaldehyde for overnight, washed with TBS, embedded with paraffin, and sectioned. Sections were deparaffinized and rehydrated. Antigen retrieval was completed using citrate buffer at pH 6.0. Samples were then washed with TBS, permeabilized with 0.3% Triton-X 100 in TBS, and blocked with 3% BSA, 20 mM MgCl, 0.3% Tween 20, 0.3 M Glycine, and 5% Donkey serum in 1xTBS. Samples were then incubated with the primary antibodies at 1:100 dilution with the blocking solution overnight. Primary antibodies used include YAP (mouse DSHB YAP1 8J19, mouse Santa Cruz sc-101199, rabbit cell signaling #14074), Lef1 (rabbit Cell Signaling #2230), pHH3 (rabbit Cell Signaling #9701), VE-cad (abcam ab33168), MF-20 (mouse DSHB MF 20), IB4 (Vector B-1205-.5), Phalloidin (Invitrogen A12379). Samples were washed with 0.3% Triton-X 100 in TBS and incubated with secondary antibodies at 1:100 dilution with 5% BSA in TBS at room temperature for 1 hr. Secondary antibodies used include species-specific Alexa Fluor 568 or 647. Samples were then washed again for 3x10 min with TBS and stained with DAPI. Images were taken with Zeiss LSM 710 confocal microscope.
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