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4 protocols using anti gabarap

1

Comprehensive Antibody Collection for Cell Signaling

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Antibodies used in this study included anti-STING (13647; Cell Signaling Technology), anti-Flag M2 (F3165; Sigma-Aldrich), anti-HA (H3663; Sigma-Aldrich), anti-EGFP (GL-8; Clontech), anti-LC3 (7543; Sigma-Aldrich), anti-p62 (PM045; MBL), anti-STX17 (HPA001204; Sigma-Aldrich), anti-SNAP29 antibody (111303, SYSY, or sc-135564; Santa Cruz Biotechnology), anti-LAMP1(L1418; Sigma-Aldrich), anti-LAMP2 (sc-18822; Santa Cruz or L0668; Sigma-Aldrich), anti-Myc (9E10, DSHB), anti-WIPI2 (ab105459; Abcam), anti-FIP200 (17250; ProteinTech), anti-ATG16L (PM040; MBL), anti-α-Tubulin (E7; DSHB), anti-VAMP8 (ab76021; Abcam), anti-GABARAP (ab109364; Abcam), anti-AMPK (2532; Cell Signaling Technology), anti-p-AMPK T172 (2535; Cell Signaling Technology), anti-TBC1D1(66433; Cell Signaling Technology), anti-p-TBC1D1 Ser237(07-2268; Sigma-Aldrich), anti-Raptor (2280; Cell Signaling Technology), anti-p-Raptor Ser792 (2083; Cell Signaling Technology), anti-TSC2 (4308; Cell Signaling Technology), anti-p-TSC2 Ser1387 (5584; Cell Signaling Technology), anti-ACC (3662; Cell Signaling Technology), anti-p-ACC Ser79 (3661; Cell Signaling Technology), anti-Glut4 (GT-41-A; Alpha diagnostic international), anti-Laminin2 (L0663; Sigma-Aldrich), anti-CD36 (80080; Abcam), anti-Dystrophin (15277; Abcam), and LysoTracker (ENZ-51005; Enzo).
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2

Autophagy Pathway Protein Detection

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Anti-LC3B (#ab48394, Abcam), anti-β-actin (#ab6276, Abcam), anti-ATG4B (#A2981, Sigma), anti-p62 (#P0067, Sigma), anti-GABARAP (#ab109364, Abcam), anti-vinculin (#ab129002, Abcam), goat anti-mouse IgG–horseradish peroxidase (HRP), and goat anti-rabbit IgG–HRP (Santa Cruz Biotechnology) antibodies were used in immunoblotting. Wortmannin (Sigma-Aldrich) was used to block autophagosome formation and bafilomycin A1 (Sigma-Aldrich) was used for autophagy flux assays.
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3

Antibodies for Autophagy Protein Analysis

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Antibodies used for this study were anti-LC3 (Cell Signaling, 4108), anti-LC3 (Novus, NB100-2220), anti-Ref(2)P (Abcam, ab178440), anti-GABARAP (Abcam, ab109364), anti-pULK1-Ser555 (Cell signaling, 5869), anti-ULK1 (Cell signaling, 8054), anti-USP5 (Proteintech, 10473-1-AP), anti-p62 (MBL, PM045), anti-Flag M2 (Sigma, F1804), anti-MYC (Santa Cruz, SC-40), anti-HA (Sigma, H9658), anti-ACTB/β-actin (Novus, NB600-501), anti-tubulin (Sigma, T0198), anti-GFP (Abcam, ab290), anti-ubiquitin (FK2; Sigma, ST1200), and anti-ubiquitin (P4D1; Cell signaling, 3936). To generate antiserum against Drosophila Atg1, the C-terminal segment of Atg1 (amino acid residues 562-855) was cloned to pET32a vector to generate 6xHis-tagged fusion protein. The fusion protein was purified using a Ni Sephsrose 6 FF column (GE Healthcare). The purified protein was used to immunize rabbits by LTK BioLaboratories and the resulting antiserum was purified by NAb Protein A Plus Spin Kit (Thermo).
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4

Antibody immunoblotting protocol

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Primary antibodies were obtained from the following sources: anti-ATXN2 (mouse monoclonal, 1:500; BD biosciences, Franklin Lakes, NJ) anti-ATXN3 (mouse monoclonal 1H9, MAB5360, 1:500–1000; Millipore, Burlington, MA), anti-dSesn (rabbit polyclonal, 1:500, Lee et al., 2010 (link)), anti-GABARAP (rabbit polyclonal, 1:1000, Abcam, Cambridge, United Kingdom). Peroxidase-conjugated secondary antibodies (goat anti-mouse, goat anti-rabbit, 1:5000; Jackson Immunoresearch, West Grove, PA).
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