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12 protocols using cxcl12 sdf 1α

1

Phosphorylation of FAK in SDF-1α-treated cells

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Control, SDF-1α/CXCL12, probenecid, and mimetic peptide treated cells were lysed with RIPA buffer (Cell Signaling, Beverly, MA) containing protease inhibitors, and 80 µg of protein were electrophoresed on a 4–20% polyacrylamide gel (Bio-Rad, CA), and transferred onto nitrocellulose membranes. Membranes were probed with rabbit monoclonal antibodies to FAK (Tyr576/577), FAK (Tyr 397), FAK (Tyr 925) or GAPDH (Cell Signaling) after SDF-1α/CXCL12 (100ng/ml, R&D Systems) treatment in the presence and absence of Panx1 blockers. Densitometric analysis was performed using NIH ImageJ software.
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2

CXCR4 Signaling Pathway Regulation

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Human recombinant chemokine SDF-1α/CXCL12 was obtained from R&D Systems Inc. (Minneapolis, MN, USA). Anti-human CXCR4 antibody was purchased from Abcam (Cambridge, MA, USA). CXCR4 antagonist, AMD3100, was purchased from Sigma-Aldrich Co. (St Louis, MO, USA). AG490 was purchased from DuPont Merck (Hangzhou, China). STAT3 and phospho-STAT3 (Serine 727) antibodies were purchased from Cell Signaling Technology (Boston, MA, USA).
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3

Panx1 Modulates CD4+ T Cell Chemotaxis

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CD4+ T lymphocytes (3×105 cells) isolated from leukopaks were added to the top of a 3 μM pore tissue culture insert to assay transmigration. Media alone or SDF-1α/CXCL12 (100ng/ml, R&D Systems) were added to the bottom chamber to generate a chemotactic gradient. For Panx1 blocking experiments, CD4+ T lymphocytes were pretreated with probenecid (500 μM) or mimetic peptides to Panx1 (200μM) for 30 minutes before the transmigration assay, and then the pretreated cells were added to the top of the tissue culture insert and allowed to transmigrate for 2 hours. Each transmigration condition was performed in 4 replicate tissue culture inserts. After 2 hours the cells that transmigrated across the filter were collected from the bottom chamber, and counted using trypan blue dye and by Flow Cytometry.
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4

Chemotaxis Assay for CLL Cells

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Chemotaxis assays across polycarbonate transwell inserts were performed as previously described32 (link). Briefly, 10 million cells were incubated in RPMI medium (containing 10% autologous plasma) in the absence or presence of 1 μM IPI-145 for 1 hr and transferred into the top chambers of Transwell® cell culture inserts (Costar®) with a diameter of 6.5 mm and a pore size of 5 μm. Filters were placed onto wells containing medium (control) or medium with 200 ng/mL CXCL12 (SDF-1α) (R&D Systems), and CLL cells were allowed to migrate for 3 hrs at 37°C. Migrated cells in the lower chamber were collected and counted on a FACSCalibur for 20 seconds at 60 μL/min in duplicates.
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5

B Cell Adhesion Assay on ICAM1/VCAM1

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The adhesion of sorted activated B cells and pre-plasmablasts to ICAM1- or VCAM1-coated slide was analyzed as follows. Eight-well chamber slides (Thermo Scientific) were coated with recombinant mouse VCAM1-Fc protein or ICAM1-Fc protein (25 μg/ml; R&D Systems) for 1.5 h at room temperature and washed 3 times with PBS. The sorted cells were washed and resuspended in IMDM medium supplemented with 10% heat-inactivated fetal calf serum, 1mM glutamine, 50 μM β-mercaptoethanol and 100 ng/ml CXCL12 (SDF-1α; R&D Systems), and subsequently 1x105 cells in 200 μl were seeded into each well. Following incubation for 6 h at 37°C, the chambers were removed and slides were washed with pre-warmed medium and then with PBS. Fixation of the cells was performed with 4% paraformaldehyde for 15 min at room temperature. The slides were washed 3 times with PBS, stained with 0.1% Crystal Violet for 30 min prior to washing with distilled water and drying. Following dehydration and embedding of the samples, images of each well were acquired. The number of cells that were attached to the glass slides was automatically counted to determine the cell number per cm2.
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6

Cytotoxicity and Migration Assays using Cannabinoids

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Cannabinoids used in cytotoxicity and migration experiments were ACEA (CB1 agonist), AM251 (CB1 antagonist, μ-opioid receptor antagonist, GPR55 agonist, ion channel activation), AM630 (CB2 antagonist/inverse agonist, weak partial CB1 agonist, ion channel activation), (-)-cannabidiol (CNB) (GPR55 & weak CB1 antagonist, CB2 inverse agonist, weak agonist at VR1 vanilloid receptors, and modulator at opioid receptors), JWH133 (CB2 antagonist), and R-(+)-methanandamide (RM) (CB1 agonist, activity against GPR and ion channels) purchased from TOCRIS Bioscience (Bristol, UK). Fludarabine (2-Fluoroadenine-9-β-D-arabinofuranoside, SIGMA-ALDRICH, Vienna, Austria) served as control in cytotoxicity experiments, CXCL12/SDF-1α (R&D SYSTEMS, Abingdon, UK) and CXCR4 antagonist AMD3100 octahydrochloride (TOCRIS Bioscience, Bristol, UK) were controls in migration experiments.
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7

Plasma Biomarkers Measurement Protocol

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To measure the biomarkers, ten millilitres of fasting venous blood were withdrawn from each participant between 8.30 a.m. and 9.30 a.m. at the research centre. The blood was sent to the laboratory within three hours after the first venepuncture. Subsequently, the whole blood samples were centrifuged at 1650 g for 25 min at room temperature to obtain the plasma. All the blood and plasma samples from both groups at the three time-points were stored at −80 °C. The nine plasma biomarkers were examined using commercially available enzyme-linked immunosorbent assay (ELISA) kits, namely, IL-6, IL-1β (ThermoFisher, Waltham, MA, USA), CXCL12/SDF-1α, CXCL5/RANTES (R&D Systems Inc., Minneapolis, MN, USA), BDNF (Promega Corporation, Madison, WI, USA), DHEA (CUSABIO, Houston, TX, USA), cortisol, hs-CRP (Tecan, Männedorf, Switzerland), and sgp130 (RayBiotech Inc., Norcross, GA, USA). Assays for each biomarker were run on the same day to avoid batch effect.
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8

Acalabrutinib Modulates CLL Cell Chemotaxis

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CLL lymphocytes isolated from peripheral blood obtained pre- and post-acalabrutinib therapy were suspended in RPMI + 10% autologous plasma. Chemotaxis assays were done as described previously (15 (link)). Briefly, cells were added to top chamber of transwell culture inserts (Costar), with a diameter of 6.5 mm and a pore size of 5 μm. Filters were placed onto wells containing medium (control) or medium with 200 ng/mL CXCL12 (SDF-1α) (R&D Systems), and CLL cells were allowed to migrate for 3 hours at 37°C. The migrated cells in the lower chamber were collected and counted (16 (link)).
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9

Plasma Biomarker Profiling Protocol

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To obtain plasma, whole blood samples were centrifuged at 1650g for 25 minutes at room temperature. Subsequently, plasma samples from the 3 time points were bio-banked at −80 °C until study completion. Assays for each biomarker were run on the same day after study completion to avoid batch effect. We employed commercially available enzyme-linked immunosorbent assay (ELISA) kits to measure the level of 9 plasma biomarkers, namely IL-6, IL-1β (ThermoFisher, Waltham, MA), CXCL12/SDF-1α, CXCL5/RANTES (R&D Systems Inc., Minneapolis, MN), BDNF (Promega Corporation, Madison, WI), DHEA (CUSABIO, Houston, TX), cortisol, hs-CRP (Tecan, Männedorf, Switzerland), and sgp130 (RayBiotech Inc., Norcross, GA).
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10

Agarose-Encapsulated CXCL12 Release Kinetics

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100 ng recombinant human (rh)CXCL12 (CXCL12/SDF-1α, R&D Systems Inc.) was mixed into 200 μL agarose and pipetted onto the wall of a 24-well plate culture well while the plate was tilted at a 45° angle to prevent the agarose from spreading across the bottom of the well before fully solidifying. The resulting gel body consists of a small ‘bead’ of approximately 3 mm in length at the edge of each well.
To test the protein release rate, BSA-conjugated fluorescein isothiocyanate (BSA-FITC, Sigma-Aldrich) was used as a model. Using the method previously stated above, 1 mg of BSA-FITC was mixed with agarose and added to 24-well plate culture wells. Release of the BSA-FITC was conducted by adding 1 mL of PBS to each well, and after each time point a 20 uL aliquot of the release solution (PBS containing released BSA-FITC) was removed and added to 180 uL of pure-PBS in a 96-well plate. After 24 hours, all aliquots taken and contained in the 96-well plate were examined using a fluorescent 96-well plate spectrometer (Spectra Max 190 Absorbance UV–VIS plate reader) at an excitation wavelength of 485 nm and the fluorescent intensity measured at the emission wavelength of 535 nm. Using a serial dilution in PBS, a calibration curve was then used to convert the data to mg/mL concentration and plotted relative to time (Additional file 1).
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