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12 protocols using non phospho β catenin

1

Protein Expression Analysis by SDS-PAGE

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Equal amount of protein was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes. Bovine serum albumin (5%) or skimmed milk was performed to block membranes. Primary antibodies include Fzd2 and CD44 (1:5,000; Abcam); interleukin-6 (IL-6), Stat3, p-Stat3 (Tyr705), non-phospho β-catenin, E-cadherin, vimentin, Slug, Wnt5a/b, Yes-associated protein 1 (Yap1), TGF-β1, Smad3, and ABCG2 (1:1,000; Cell Signaling Technology, Boston, MA, USA); Wnt3, Col1a1, and Col6a1 (1:1,000; Abcam); Zeb1 (1:500; Sigma-Aldrich, St. Louis, MO, USA); and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:500; Proteintech, Chicago, IL, USA) were incubated with the membranes overnight. SuperSignal Chemiluminescent Substrates (Thermo Fisher Scientific) and imaging systems were used to analyze the results.
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2

Immunohistochemical Analysis of Dental Samples

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Immunostaining and routine histological analyses by H and E staining were carried out, as previously described [51 (link)]. Calcified teeth were sectioned following decalcification using 0.5 M EDTA for three weeks. For immunostaining, sections were first rehydrated and then processed for antigen retrieval. Blocking was performed by incubating the sections in the 1X western blocking solution (Roche, Mannheim, Germany; Ref. 11921673001) for one hour at room temperature. The primary antibodies used in this study were directed against Ki67 (Thermo Scientific, Waltham, MA, USA, cat. no. RM-9106-s), non-phospho β-catenin (Cell Signaling Technology, Danvers, MA, USA, cat. no. 8814S), and pSMAD (Cell Signaling Technology, Danvers, MA, USA; cat. no. 9511S). The secondary antibodies used in this study were biotinylated goat anti-rabbit IgG (Invitrogen, Waltham, MA, USA) and goat anti-rabbit IgG Flamma 488 (BioActs, Incheon, Korea, cat. no. RSA1241).
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3

Western Blot Analysis of EMT Markers

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Cell lysates were separated by 10% SDS-PAGE and transferred into polyvinylidene difluoride (PVDF) membranes (Millipore), which were incubated with antibodies specific to Kindlin-2 (MAB2617, Millipore; dilution 1:3000), E-cadherin (ab40772, Abcam, Cambridge, UK; 1:10,000), N-cadherin (ab76011, Abcam; 1:5000), Vimentin (5741, Cell Signaling Technology, Danvers, MA, USA; 1:1000), Snail (3879, Cell Signaling Technology; 1:1000), β-catenin (8480, Cell Signaling Technology; 1:1000), phospho-β-catenin (9561, Cell Signaling Technology; 1:1000), non-phospho-β-catenin (8814, Cell Signaling Technology; 1:1000), Axin2 (ab109307, Abcam; 1:1000), MMP7 (ab205525, Abcam; 1:1000) and GAPDH (ab8245, Abcam; 1:5000) overnight at 4 °C, followed by incubation with HRP-conjugated goat anti-mouse IgG antibody. Blots were visualized using an enhanced chemiluminescence kit and detected using QuantityOne software (Bio-Rad, Hercules, CA, USA).
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4

Protein Expression Analysis via Western Blot

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Protein was extracted from the cells using RIPA or IP buffer containing cocktails, resolved by SDS–polyacrylamide gels and then transferred to PVDF membranes. Primary antibodies against DKK4 (Abcepta, Cat# AP11649b, RRID: AB_10819953), β-catenin (Santa Cruz, Cat# sc-7963, RRID: AB_626807), nonphospho-β-catenin (Cell Signaling Technology, Cat# 4270, RRID: AB_1903918), phospho-β-catenin (Cell Signaling Technology, Cat# 9561, RRID: AB_331729), Met (Cell Signaling Technology, Cat# 8198, RRID: AB_10858224), Cyclin D1 (Cell Signaling Technology, Cat# 2978, RRID: AB_2259616), ubiquitin (Santa Cruz, Cat# sc-8017, RRID: AB_628423), LRP6 (Santa Cruz, Cat# sc-25317, RRID: AB_627894), and β-actin (Proteintech, Cat# 66009-1-lg, RRID: AB_2687938) were used. Peroxidase-conjugated secondary antibody (ZSGB-BIO, China) was used, and the antigen-antibody reaction was visualized by an automatic digital chemiluminescence imaging system (4600SF, Tanon, China). Band intensities were measured with ImageJ software. Statistical analysis was carried out with three technical replicates using each protein sample.
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5

Western Blot Analysis of Cornea Proteins

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Proteins were extracted from the corneas or cells with cold RIPA buffer, and concentrations were measured using a BCA assay kit (Pierce, Rockford, IL). Equal amounts (50 μg per lane) of total protein were subjected to electrophoresis on 8% SDS polyacrylamide gel electrophoresis and then electro-transferred onto nitrocellulose membranes. After blocking with 10% fat-free milk for 1 h, the membranes were incubated with primary antibodies overnight at 4°C, and then incubated with the HRP-conjugated secondary antibody for 1 h. The specific bands were visualized by enhanced chemiluminescence re-agents (Pierce, Rockford, IL, USA), recorded by the transilluminator (ChemiDox XRS; Bio-Rad, USA) and quantified by densitometry using Image J and normalized by β-actin. Primary antibodies were the rabbit antibodies against phosphorylated LRP6 (pLRP6) (Cell Signaling Technology, Cat#2568), total LRP6 (Santa Cruz, Cat#sc-15399), nonphospho-β-catenin (Cell Signaling Technology, Cat#8814), VEGF (Abcam, Cat#ab46154), ICAM-1 (Abcam, Cat#ab27536), and the mouse antibody against β-actin antibody (Sigma-Aldrich, Cat#A5441).
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6

Western Blotting Analysis of Apoptosis and EMT Markers

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For western blotting, equal amounts of extracted protein from the cells were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride membrane (PVDF). The membranes were blocked with 5% degreased milk in Tris-buffered saline and 0.1% Tween-20 (TBST) and incubated overnight with the appropriate primary antibody against PARP, caspase-3, Snail, n-cadherin, zo-1, non-phospho-β-catenin (Cell Signaling Technology, MA, USA), vimentin, E-cadherin or β-actin (Santa Cruz Biotechnology, Santa Cruz, CA, USA). The following day, membranes were incubated with appropriate secondary antibodies conjugated with HRP. The signals on the blots were detected using an enhanced chemiluminescence (ECL) solution.
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7

Western Blot Analysis of Protein Markers

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Cells were lysed in RIPA cell lysis buffer (Beyotime, Shanghai, China) in the presence of protease inhibitor cocktail (Biotool, Huston, USA) and PMSF (Beyotime). Protein concentration was quantified by BCA protein assay kit (Beyotime). 50μg of the extracts were separated on 10% SDS-PAGE and transferred to PVDF membrane. Membrane was then blocked with 5% non-fat milk and incubated overnight with the following primary antibodies, respectively, which are Keratin10 (Abcam, Cambridge, USA), Involucrin (Proteintech, Wuhan, China), OCT4 (Proteintech), SOX2 (Proteintech), GSK-3β (Abcam), β-catenin (Proteintech), non-phospho β-catenin (Cell Signaling, Boston, USA) and LEF1 (Proteintech) followed by incubation with appropriate secondary antibodies conjugated to horseradish peroxidase (HRP) for 1 h. Hybridization signal was detected by enhanced chemi-luminescence (ECL) (ThermoFisher, MA,USA) according to the manufacturer's instructions. GAPDH (ZSGB-BIO, Guangdong, China) was used as reference protein and determined following the same procedure as above.
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8

Protein Expression Analysis of Cell Lysates

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After desired treatments, cells were lysed with RIPA buffer spiked with a fresh protease and phosphatase cocktail (Thermo Scientific, #78442) and sonicated. Protein concentrations were quantified using the Pierce BCA assay kit (Thermo Fisher, #23225). 80–120μg of protein for each sample was loaded onto SDS-PAGE gels, and then transferred onto PVDF membranes. The blots were incubated with the following antibodies: desmocollin 1 (sc-398590, RRID: AB_2894905), desmoglein 2 (sc-80663, RRID: AB_2093438), plakophilin (sc-33636, RRID: AB_2164139), connexin 26 (sc-7261, RRID: AB_2110895) and cFOS (sc-52, RRID: AB_2106783) from Santa Cruz; ER-α (#8644, RRID: AB_2617128), HA (#3724, RRID: AB_1549585), Non-phospho-β-catenin (#19807, RRID: AB_2650576), Histone H3 (#4499, RRID: AB_10544537), AIF (#5318, RRID: AB_10634755), GSK3β (Ser9, #5558, RRID: AB_10013750), phospho-GSK3α (Ser21, #9316, RRID: AB_659836), GSK3β (#12456, RRID: AB_2636978) and GSK3α (#4337, RRID: AB_10859910) from Cell Signaling Technology; β-catenin (#610154, RRID: AB_397555) from BD; Tubulin (T6557, RRID: AB_477584) and connexin 43 (C6219, RRID: AB_476857) from Sigma Aldrich; and TIMP3 (ab39184, RRID: AB_2204971) from Abcam.
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9

Lysate Preparation and Western Blotting

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The cells were lysed at 4°C in RIPA buffer containing 50 mM Tris-HCl (pH 7.4), 150 mM NaCl, 1% Triton X-100, 0.25% sodium deoxycholate, 5 mM EDTA (pH 8.0), and 1 mM EGTA supplemented with protease and phosphatase inhibitors. After 20 min of lysis on ice, the cell debris was removed via microcentrifugation, followed by rapid freezing of the supernatants. The protein concentration was determined using the Bradford method. In our experiments, equivalent loads of 25–50 g of protein were electrophoresed using a SDS-polyacrylamide gel and then electrophoretically transferred from the gel to a PVDF membrane (Millipore, Bedford, MA, USA). After blocking with 5% non-fat milk, the membrane was incubated in specific primary antibodies (NIFK: Abcam, ab13880, 1:1000; Ki-67: Dako, Code M7240, 1:500; CK1α: Abcam, ab88079, 1:1000; non-phospho-β-catenin: Cell Signaling, #8814, 1:1000; phospho-β-catenin (Ser45): Cell Signaling, #9564, 1:1000; RUNX1: Cell Signaling, #4336, 1:1000) overnight at 4°C and subsequently incubated in a corresponding horseradish peroxidase-conjugated secondary antibody for 1 hr. The membranes were visualized using the ECL-Plus detection kit (PerkinElmer Life Sciences, Boston, MA, USA).
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10

Wnt3a-Induced Proinsulin and β-Catenin Expression

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N39 cells were seeded on poly-l-lysine–coated coverslips. After treatment with Wnt3a for 24 h, cells were washed with PBS, fixed with 4 % paraformaldehyde and permeabilized in 0.2 % Triton X-100, 0.1 M glycine. The cells were then washed with PBS, blocked with BSA containing antibody diluent (Invitrogen) at room temperature (RT) and incubated with antibodies against proinsulin (1:50; R&D Systems), non-phospho β-catenin (1:500; Cell Signaling), and NeuroD1 (1:200; Santa Cruz) at 4 °C. Coverslips were incubated with secondary antibodies for 2 h at RT, and Hoechst 33342 (Invitrogen) was used for nuclear staining for 10 min at RT. ProLong Diamond Antifade Mountant (Invitrogen) was used for mounting coverslips. Each slide was analyzed with an LSM700 confocal microscope (Carl Zeiss). Images were analyzed with ZEN2012 software (Carl Zeiss).
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