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96 protocols using bx60 light microscope

1

Assessing Cisplatin Sensitivity in A549 Cells

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For the colony forming assay, ~200 A549 or A549R cells were seeded in 12-well plates and incubated at 37˚C with DMEM containing 0 or 10 µM cisplatin for 3-5 days. The cell colonies were stained at room temperature with 0.005% crystal violet for 10 min and observed with a UVP imaging system (UVP; LLC, Phoenix, AZ, USA). The colony number and size were quantified, respectively. To generate the growth curves of A549 or A549R cells, 10 3 cells were incubated with DMEM containing 0 or 10 µM cisplatin for 0, 24, 48 or 72 h at 37˚C, under 5% CO 2 . Then the cell number in each group was counted with the Olympus BX60 light microscope (Olympus Corporation, Tokyo, Japan). For the cell migration assay, A549 or A549R cells were cultured in 25 cm cell dishes with DMEM + 10% FBS to ~85% confluence, and were then scratched with a cell scratcher (Costar; Corning Incorporated). Cells were cultured for a further 24 h at 37˚C with DMEM + 10% FBS, containing 2 µM cisplatin. The number of cells that crossed the baseline was then counted as the number of migrating cells using the Olympus BX60 light microscope (Olympus Corporation).
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2

Histological Analysis of Vital Organs

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Liver, pancreas, colon, heart, lung, spleen, liver, testis, brain and epididymal fat were dissected, fixed in formaldehyde for 24 h and then stored in 70% ethanol at 4 °C. The organs were embedded into paraffin wax, sectioned 5 µm thick with an Accu-Cut SRM 200 Rotary Microtome, and stained with haematoxylin and eosin. Slides were examined under an Olympus BX60 light microscope.
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3

Histological Analysis of Coronary Arteries

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SQAT, OMAT, and LAD coronary artery rings were fixed and stained with hemotoxylin and eosin, as previously described (10 (link)). Digital images were captured with an Olympus BX60 light microscope and Olympus SC 100 camera (Waltham, MA). Adipocyte size was calculated based on 100 adipocytes/animal from six fields of view using Image J software as described previously (14 (link)). Separate slides were stained with porcine-specific anti-scavenger receptor class A (SRA) (Anti MSR-A/CD204, 1:100, Cosmo Bio USA, #KAL-KT022) antibody and examined by an investigator blinded to the treatment groups.
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4

Histological Analysis of Gerbil Prostate

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The PrCs from male gerbils were fixed by immersion in 4% paraformaldehyde (buffered in 0.1 mol l−1 phosphate, pH 7.2) or in metacarn (proportions: methanol 60%, chloroform 30% and acetic acid 10%) for 3 h. After fixation, the tissues were washed in water, dehydrated in ethanol, clarified in xylene and embedded in paraffin (Histosec, Merck, Dermstadt, Germany). Serial tissue sections of 5 μm were obtained for all tissue fragments using an automatic rotator microtome (Leica RM2155, Nussloch, Germany). The sections were stained with hematoxylin-eosin (H and E) and picrosirius for general morphological analysis. Prostatic reticular fibers and elastic fibers were identified, respectively, by Gömöri's reticulin and resorcin-fuchsin techniques. The specimens were analyzed with an Olympus BX60 light microscope (Olympus, Tokyo, Japan), and the images were digitalized using the software DP-BSW V3.1 (Olympus).
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5

Fluorescence and Confocal Microscopy Protocol

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Sections were examined using an Olympus BX60 light microscope equipped with fluorescent epi-illumination and a dark-field condenser. Images were captured at 2048 × 2048 pixel resolution with a SPOT Xplorer digital CCD camera (Diagnostic Instruments, Sterling Heights, MI, USA) using 4–40× objectives. Confocal images were acquired with a Nikon Eclipse E800 confocal microscope equipped with a BioRad Radiance 2100 Laser Scanning System using 20–60× objectives at an optical thickness of 1–3 μm. Images were adjusted using the “levels” and “sharpness” commands in Adobe Photoshop CS 8.0. Full resolution of the images was maintained until the final versions, which were adjusted to a resolution of 300 dpi.
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6

Dual-Labeling of Galanin and Oxytocin

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One set of every fourth free-floating section from the five rat dams used for single-labeling of galanin was used for double labeling of galanin and oxytocin. First, galanin was immunolabeled using FITC-tyramide amplification immunofluorescence, as described above. Sections were then incubated in citrate buffer at 70 °C for 1 h, and then placed in mouse anti-oxytocin primary antiserum (1:1000; catalogue number: ab78364, Abcam, Cambridge, UK) for 24 h at room temperature and visualized with Alexa Fluor 594 donkey anti-mouse IgG secondary antibody (Thermo Fisher Scientific, Waltham, MA, USA) for 1 h. Subsequently, the sections were mounted, dried, and cover-slipped in antifade medium (Prolong Antifade Kit; Molecular Probes).
After identifying the preoptic sections with the most galanin-ir neurons in the ACN and the MPA in each of the five animals double labeled for galanin and oxytocin, we counted all galanin-ir neurons with an identifiable cell nucleus and all double-labeled cells. Counts were obtained using an Olympus BX60 light microscope with a 20× objective, fluorescent epi-illumination, and a filter that allows for simultaneous green and red visualization.
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7

Quantifying Neurodegeneration in Rat Cortex

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Rats were anesthetised with sodium pentobarbital (100 mg/kg, intra-peritoneal) and perfused trans-cardially with paraformaldehyde (4%) in phosphate buffer (0.1 M). The brains were removed and placed in 4% paraformaldehyde in 0.1 mol/L phosphate buffer overnight. The brains were dehydrated and embedded in wax. Coronal sections of 5 mm were harvested at approximately -3.6 mm from the bregma relative to adult brain and then stained with 0.5% cresyl violet. The microphotograph was taken at 20× using a BX-60 light microscope (Olympus, Southall, UK) attached with a digital camera (Zeiss, Gottingen, Germany). The following morphologic criteria were used to analyse apoptotic or necrotic cell death in the cerebral cortex [44 (link)]. Necrotic or apoptotic cells were identified by dark-stained, shrunken nuclei that were spherically shaped with loss of nuclear membrane integrity. The total number of healthy cells that appeared in the cortex in cresyl violet staining slices were counted in a blinded manner and their mean value used for data analysis.
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8

Aerenchyma Formation in Root Segments

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Aerenchyma formation was examined using the same roots that were used for the ROL measurements described above. Following determination of ROL, the root segments of 10–100 mm from the tips were stored in 50% ethanol for later anatomical observations. Segments of roots that had grown aerobically were taken after transferring to stagnant, deoxygenated conditions on day 0 (i.e. control) and on days 1, 2, 3, and 4. The segments were 4 mm long and were taken at 10-mm intervals with their centers at 20–100 mm from the tip. Transverse sections were made by hand using a razor blade, and were imaged using a BX60 light microscope with a DP70 CCD camera (both Olympus). The area occupied by aerenchyma was measured using the Image J software (version 1.46r; https://imagej.nih.gov/ij/) and is expressed as a percentage of the entire cross-sectional area of the root.
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9

Ultrastructural Analysis of Cancer Cells

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Cancer cell cultures were acquired and immediately fixed in neutral buffered 2.5% glutaraldehyde at room temperature (25°C). The specimens were post-fixed in 1% osmium tetroxide (OsO4) for 10 minutes, dehydrated using a graded ethanol series, enbloch stained with 2% uranyl acetate in 50% ethanol for 30 minutes, and embedded in Spurr's epoxy resin. Semi-thin (1 μm) and ultra-thin (< 90 nm) sections were cut using a Diatome 3 mm diamond knife on the Leica EM UC6 ultramicrotome. Semi-thin sections were stained with toluidine blue and examined using an Olympus BX60 light microscope with an attached Olympus DP71 digital camera. All ultra-thin sections were stained using lead citrate to be viewed under TEM on a Jeol 1400 EM at 80 kV. Images for publication were compiled into using Photoshop CS5 software.
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10

Electron Microscopic Examination of Embryos

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For light and electron microscopic examination, the embryos or larvae were fixed in 2.5% glutaraldehyde in 0.1 M phosphate buffer pH 7.2 for 24 h at 4 °C. The material was rinsed 3 times with phosphate buffer and was postfixed for 2 h in a 1:1 mixture of osmium tetroxide-potassium ferricyanide (OsO4-K3Fe (CN)6). Following rinsing in the phosphate buffer, the material was dehydrated, first in a graded alcohol series and then in acetone. Then, it was embedded in epoxy resin Epon 812 (Sigma-Aldrich, St. Louis, MI, USA) [58 (link)]. The Epon blocks were sectioned on a Leica Ultracut UCT (Leica, Wetzlar, Germany). Semithin sections (0.6 μm) were collected on glass slides and stained with methylene blue (in a 1% borax solution). The stained sections were examined under an Olympus BX60 light microscope (Olympus, Hamburg, Germany). The ultrathin sections were collected on 200-mesh copper grids and were stained with uranyl acetate and lead citrate according to the standard protocol [59 (link)], before being examined under the transmission electron microscope JEM-1011 (JEOL, Tokyo, Japan).
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