The largest database of trusted experimental protocols

128 protocols using ab5535

1

Immunofluorescence Staining of Retinal and Human Progenitor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HuPMCs in 24-well plates were fixed in 4% PFA for 1 hr, then rinsed and stored in PBS for later immunofluorescence staining. Retinal vibratome sections and huPMCs were initially blocked in 5% normal goat serum (Sigma) overnight at 4°C. Sections were immunostained with primary antibodies: PHGDH (Millipore, ABS571, 1:1000), CRALBP (Abcam, ab15051, 1:500), GFAP (Abcam, ab53554, 1:1000), Carbonic Anhydrase II (Abcam, ab6621, 1:1000), SOX9 (Millipore, ab5535, 1:1000) diluted in PBS containing 1% normal goat serum and 0.5% Triton X-100. Vibratome sections were incubated for 4 nights at 4°C. Thereafter, huPMCs were incubated with species-specific secondary antibodies conjugated with Alexa Fluor 488 (green) or 594 (red) (Molecular Probes) at a 1:1000 dilution for 2 hr at room temperature; while the vibratome sections were incubated at 4°C overnight. Cells and sections were then rinsed with PBS and nuclei were stained with Hoechst 33342 (Thermo Fisher Scientific). After mounting in VECTASHIELD antifade mounting medium (Vector Laboratories), immunofluorescence labelling of huPMCs and vibratome sections was captured with the ZEISS confocal laser-scanning microscope (LSM700, Carl Zeiss) and ZEN Blue software.
+ Open protocol
+ Expand
2

Protein Expression Analysis in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblot and immunofluorescence analysis were performed as previously described18 (link). Primary antibodies used were: SOX9 (AB5535, Millipore), phospho-SOX9 (ab59252, abcam), BMI1 (05-637, Millipore), E-cadherin (BD610181, BD Transduction Laboratories), Vimentin (M7020, DAKO), N-Cadherin (BD610920, BD Transduction Laboratories), phospho-S6 Ribosomal protein (Cell Signaling Technology®, #4858) and β-actin (AC-15, Sigma). For Western blot detection of primary antibodies, we used HRP-linked antibodies (Santa Cruz Biotechnology) and detection was performed by chemiluminescence using NOVEX ECL Chemi Substrate (ThermoFisher). For immunofluorescence, secondary antibodies conjugated with fluorochromes were used and nuclear DNA was stained with Hoechst 33342 (Sigma). Images were obtained at a 40x magnification.
+ Open protocol
+ Expand
3

Immunohistochemical Analysis of Testicular Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Test samples from control and all-dosed-CORT mice were embedded with Tissue-Tek OCT compound, frozen in liquid nitrogen, and stored at − 80 °C until examination. Embedded testes were dissected with a cryostat at 5 m. The sections were fixed with acetone for 2 min at − 20 °C. For immunohistochemistry, separate sections were incubated with primary antibodies: rabbit anti-p27 polyclonal antibody (ab190851, Abcam; 1:100 dilution) that recognizes CDK inhibitor, rat anti-GATA-1 monoclonal antibody (N6) (sc-265, Santa Cruz Biotechnology, Inc.; 1:100 dilution) or rabbit anti-SOX-9 polyclonal antibody (ab5535, Millipore; 1:2000 dilution), that recognizes a marker of Sertoli cells. Following overnight reaction, sections were washed and incubated with a biotinylated anti-rabbit or rat immunoglobulin IgG (1:200) for 30 min and labeled with avidin-biotinylated horseradish peroxidase (PK-6101, Vectastain ABC Elite Kit, Vector Laboratories, Burlingame, CA, United States) for 30 min at room temperature. Following washing, immunoreactivities were visualized with 3,3′-diaminobenzidine (DAB), and sections were counterstained with Gill’s hematoxylin III. Twenty circular seminiferous tubules were randomly selected for each animal, and immunoreactive cells were counted using the ImageJ 1.51J8 program.
+ Open protocol
+ Expand
4

Comprehensive Antibody Characterization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols

Antibody NameAntigenAntibody infoDilution
Sox9KLH-conjugated peptide VPSIPQTHSPQHWEQPVYTQLTRP
from human Sox9
Millipore (AB5535) Rabbit polyclonal RRID:
AB_2239761
1:4,000
RNA-binding Protein with Multiple Splicing
(RBPMS)
RBPMS 4–24: GGKAEKENTPSEANLQEEEVRCKLHRodriguez et al.
(2014)
Guinea pig polyclonal
1:1,000
GFPGFP isolated directly from the jellyfish
Aequorea victoria
Life Technologies (A10262) Chicken polyclonal
RRID: AB_2534023
1:1,000
mCherryRecombinant His-tagged mCherryCai et al.
(2013)
Rabbit polyclonal
1:3,000
mKateRecombinant His-tagged mKate2Cai et al.
(2013)
Guinea pig polyclonal
1:1000
Choline Acetyltransferase (ChAT)Human placental enzymeMillipore (AB144P) Goat polyclonal
RRID:AB_2079751
1:400
Calbindinrecombinant rat calbindin D-28kSwant (CB38) Rabbit polyclonal RRID:
AB_10000340
1:10,000
Tyrosine Hydroxylase (TH)Native tyrosine hydroxylase from rat
pheochromocytoma
Millipore (AB1542) Sheep polyclonal RRID:
AB_90755
1:3,000
Protein Kinase C (PKC)Purified bovine brain protein kinase CAbcam (Ab31) Mouse monoclonal, clone MC5 RRID:
AB_303507
1:500
CD31129/Sv mouse-derived endothelioma cell line
tEnd.1
BD Biosciences (550274) Rat monoclonal, clone
MEC13.3 RRID: AB_393571
1:100
CalretininRecombinant rat calretininMillipore (AB5054) Rabbit polyclonal RRID:
AB_2068506
1:2,000
+ Open protocol
+ Expand
5

Murine Tumor Histopathological Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumors generated in mice were dissected, fixed in 10% formalin for 48 hours and embedded in paraffin. 4 µm thick sections were stained with hematoxylin and eosin (H&E). For immunohistochemistry, sections were rehydrated and heated in citrate buffer pH 6 for antigen retrieval. Antibodies used for detections included SOX9 (AB5535, Millipore), BMI1 (05-637, Millipore), p21CIP (sc-6246, Santa Cruz Biotechnology) and Ki67 (ab15580, Abcam). The stainings were developed with 3,3′ Diaminobenzidine (DAB) and nuclei were counterstained with hematoxylin.
+ Open protocol
+ Expand
6

Immunohistochemistry and Immunofluorescence Analysis of Tissue Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical staining was performed on formalin-fixed, paraffin-embedded tissue sections as described in 45 (link). Primary anti-Ki67 polyclonal antibody (clone SP6; M3062, Spring Bioscience) was from Spring Bioscience.
Immunofluorescences on PFA-fixed paraffin embedded tissue slices was performed as in 45 (link). Primary antibodies were anti-cytokeratin (wide spectrum screening, ZO622; Dako), anti-HNF4α (sc-6556; Santa Cruz Biotechnology), anti-SOX9 (AB5535; Millipore) and anti-GFP (ab13970; abcam). Samples were counterstained with ProLong-DAPI (Molecular Probes, Life Technologies) to label cell nuclei. Confocal images were obtained with a Leica TCS SP5 equipped with a CCD camera. Bright field images were obtained with a Nanozoomer Scanner 2.0RS (Hamamatsu).
+ Open protocol
+ Expand
7

ChIP Assay for SOX9 and SOX6 in Rat Chondrocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ChIP assay was performed on RCS using the EZ Chip kit (EMD Millipore 17-371) as per vendor instructions. Briefly, confluent RCS cultures were crosslinked for 10 min with freshly prepared formaldehyde (1% final), quenched with 10X glycine, washed with cold PBS, scraped and centrifuged. The cell pellet was resuspended in 2 ml cell lysis buffer and sonicated 7 pulse of 30 sec with 30 sec pause between each (40% amplitude) (Sonic Dismembrator, Model 500, Fisher Scientific). The sheared chromatin was further purified with MinElute reaction cleanup kit (Qiagen), aliquoted and frozen at -80 °C until use. The sheared chromatin was pre-cleared with protein G agarose followed by immunoprecipitation with 6μg of the following antibodies: SOX9 (Millipore AB5535), SOX6 (Millipore Ab5805 and Abcam Ab30455), normal rabbit IgG (SantaCruz sc-2027), or without antibody. Samples were reverse crosslinked, purified on columns, and DNA was eluted with 50μl. Typically, 5μl of the purified material was used in two PCR with primers covering Snorc exon 1 or the intronic enhancer region, and the rat aggrecan (Acan) A1 enhancer located about 10 kb upstream of exon 1.
+ Open protocol
+ Expand
8

Validating SOX9 antibody for astrocyte staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
The SOX9 antibody (Millipore, AB5535) was generated against C-terminal sequence of human SOX9. It recognizes a single band of ~65 kDA on Western blot of fetal mouse brain lysates (manufacturer’s technical sheet). Previous studies have used this antibody to stain nucleus of astrocytes using IHC (Barnabé-Heider et al., 2010 (link); Yoshioka et al., 2012 (link)).
+ Open protocol
+ Expand
9

Immunohistochemical Analysis of Testicular Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Testes and epididymides were fixed in Bouin’s solution for 2 h at room temperature, embedded in paraffin, and sectioned at 5 µm thickness. Slides were de-waxed, rehydrated, and heated in 10 mM sodium citrate buffer (pH 6.0). The slides were then blocked with 2.5% horse serum (Vector Laboratories, California, USA) for 30 min, incubated with primary antibodies for 1 h, washed with PBS, incubated with the secondary antibodies (ImmPRESS-HRP detection kit, Vector Laboratories) for 30 min, and washed with PBS, at room temperature. The primary antibodies are as follows: anti-STRA8 (1:500 dilution; ab49405, Abcam, Massachusetts, USA), anti-BrdU (1:500 dilution; ab6326, Abcam), anti-SOX9 (1:200 dilution; AB5535, Millipore, Massachusetts, USA), and anti-γH2AX (1:200 dilution; ab11174, Abcam). For colorimetric detection, slides were developed using a DAB substrate kit (Vector Laboratories), counterstained with Mayer’s hematoxylin, dehydrated, and mounted with Permount (Fisher Scientific).
+ Open protocol
+ Expand
10

Immunofluorescence Analysis of ZIKV and Germ Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue sections were incubated with mouse anti-ZIKV NS1 monoclonal antibody (1:500, GT5212, Invitrogen), mouse anti-DDX4 antibody (1:400, ab27591, Abcam), rabbit anti-SOX9 antibody (1:400, AB5535, Millipore), and rabbit anti-Oxytocin antibody (1:400, ab212193, Abcam) as the primary antibody at 4°C overnight, and then incubated with Alexa Fluor 488 goat anti-mouse IgG (1:1000, A21202, Invitrogen, USA) or Alexa Fluor 594 donkey anti-rabbit IgG (1:1000, A21207, Invitrogen, USA) at 37°C for 1 h. All images were captured with laser confocal scanning microscopy (Leica TCS SP5).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!