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22 protocols using 6230 tof lc ms spectrometer

1

Microwave-assisted Organic Synthesis

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All commercial chemicals were used as supplied unless otherwise indicated. Microwave reactions were carried out in a Biotage Initiator+ w. Robot Eight Microwave System. Compounds were purified via flash chromatography using a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. All moisture sensitive reactions were performed under an inert atmosphere of ultra-pure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on a Varian 600 or Bruker 400 MHz spectrometers. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer. Procedures for chemical synthesis, analytical characterization data, and original 1H and 13C NMR spectra for all tested compounds are described in Supporting Information.
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2

Synthetic Methodology for Molecular Probes

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All commercial chemicals were used as supplied unless otherwise indicated. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. All moisture sensitive reactions were performed under an inert atmosphere of ultra-pure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on a Varian 600 or Bruker 400 MHz spectrometers. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer. See supplementary materials for detailed synthetic procedure, compound characterization data and original 1H and 13C NMR spectra.
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3

Analytical Characterization of Organic Compounds

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All commercial chemicals were used as supplied unless otherwise indicated. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. 1H and 13C NMR spectra were recorded on a Varian 600 MHz or Bruker 400 spectrometer. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer. All NMR and mass spectrometers are located in the shared instrument rooms at the Center for Drug Design, University of Minnesota.
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4

Synthesis of Amino Acid Derivatives

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Amino acid
derivatives were obtained from Bachem, and other chemicals were purchased
from Sigma-Aldrich. Reagents were of the highest purity available. 1H, 13C, and NMR spectra were recorded in dimethyl
sulfoxide-d6 (DMSO-d6) with a Bruker Avance III spectrometer operating at 500 and
125 MHz. High-resolution mass spectrometry (HRMS) spectra were recorded
using an Agilent 6230 TOF LC/MS spectrometer. In some cases, preparative
HPLC was applied, Agilent Prep HPLC, on a Gemini 250 × 50.00
mm; 10 μm, C18, 110A column in 0.2% TFA or ammonium carbonate
in water (eluent A) and the acetonitrile (eluent B) liquid phase using
the gradient method.
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5

Synthesis of Deazaflavin Analogues

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All commercial chemicals were used as supplied unless otherwise indicated. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. All moisture sensitive reactions were performed under an inert atmosphere of ultrapure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on a Varian 600 MHz or Bruker 400 spectrometer. Mass data were acquired on an Agilent 6230 TOF LC/MS spectrometer capable of ESI and APCI ion sources. Analysis of sample purity was performed on a Varian Prepstar SD-1 HPLC system with a Phenomenex Gemini, 5 μm C18 column (250 mm × 4.6 mm). HPLC conditions: solvent A = H2O, solvent B = MeCN; flow rate = 1.0 mL/min; compounds were eluted with a gradient of 20% MeCN/H2O to 100% MeCN for 30 min. Purity was determined by total absorbance at 254 nm. All tested compounds have a purity ≥ 97%.
Deazaflavin analogues (4a-d) were reported earlier by Raoof et al.15 (link)
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6

Microwave-Assisted Organic Synthesis Protocols

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All commercial chemicals were used as supplied unless otherwise indicated. Microwave synthesis was performed with a Biotage Initiator Microwave Synthesizer. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. All moisture sensitive reactions were performed under an inert atmosphere of ultra-pure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on a Varian 600 MHz or Bruker 400 spectrometer. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer. All NMR and mass spectrometers are located in the shared instrument rooms at the Center for Drug Design, University of Minnesota. Analysis of sample purity was performed on a Agilent Varian Prepstar SD-1 HPLC system located in our own lab with a Phenomenex Gemini, 5 ¼m C18 column (250mm × 4.6 mm). HPLC conditions: solvent A: H2O with 0.1% TFA; solvent B: MeCN; flow rate 1.0 mL/min; compounds were eluted with a gradient of 20% MeCN/H2O with 0.1% TFA to 100% MeCN for 20 min. All tested compounds have a purity ≥ 97%.
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7

Synthesize and Purify Compounds

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All commercial chemicals were used as supplied unless otherwise indicated. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. All moisture sensitive reactions were performed under an inert atmosphere of ultra-pure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on a Varian 600 or Bruker 400 MHz spectrometers. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer. Melting points were taken using Electrothermal Mel-Temp melting point apparatus. Compound purity analysis was performed using Agilent 1260 Infinity HPLC with an Eclipse C18 column (3.5 μm 4.6×100 mm). HPLC conditions: Flow rate = 1.0 mL/min; Solvent A = 0.1% TFA in water; Solvent B = 0.1% TFA in acetonitrile; Gradient (B %): 0–6 min (5–100); 6–8 min (100); 8–9 min (100–5). Determined purity was > 95% for all final compounds.
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8

General Experimental Procedures

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General procedures. All commercial chemicals were used as supplied unless otherwise indicated. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica) and indicated mobile phase. All moisture-sensitive reactions were performed under an inert atmosphere of ultra-pure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on Varian 600 or Bruker 400 MHz spectrometers. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer.
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9

Purification and Characterization of Synthetic Compounds

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All commercial chemicals were used as supplied unless otherwise indicated. Flash chromatography was performed on a Teledyne Combiflash RF-200 with RediSep columns (silica). All moisture sensitive reactions were performed under an inert atmosphere of ultra-pure argon with oven-dried glassware. 1H and 13C NMR spectra were recorded on a Varian 600 MHz spectrometer. Mass data were acquired using an Agilent 6230 TOF LC/MS spectrometer. Analysis of sample purity was performed on a Varian Prepstar SD-1 HPLC system with a Phenomenex Gemini, 5 µm C18 column (250mm × 4.6 mm). HPLC conditions: solvent A: H2O with 0.1% TFA; solvent B: MeCN; flow rate 1.0 mL/min; compounds were eluted with a gradient of 20% MeCN/H2O with 0.1% TFA to 100% MeCN for 20 min. All tested compounds have a purity ≥ 95%.
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10

Characterization of Organic Compounds

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All chemical reagents and solvents were purchased from Sigma-Aldrich and used without further purification. Water (18 MΩ) was purified using a Millipore Analyzer Feed System. Solid-phase resins were purchased from Advanced ChemTech and Chem-Impex International.
Reversed-phase high-performance liquid chromatography (RP-HPLC) was performed using a Shimadzu system equipped with a CBM-20A communications bus module, two LC-20AT pumps, an SIL-20A auto sampler, an SPD-20A UV/vis detector, a CTO-20A column oven, and an FRC-10A fraction collector. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) data were obtained on a Bruker Microflex spectrometer equipped with a 60 Hz nitrogen laser and a reflectron. In positive ion mode, the acceleration voltage on Ion Source 1 was 19.01 kV. Exact mass (EM) data were obtained on an Agilent Technologies 6230 TOF LC/MS spectrometer. The samples were sprayed with a capillary voltage of 3500 V, and the electrospray ionization (ESI) source parameters were as follows: gas temperature of 325 °C at a drying gas flow rate of 8 L/ min at a pressure of 35 psi.
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