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12 protocols using lps e coli 026 b6

1

Murine Dendritic Cell Generation

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Marrow from tibias and femurs of mice were harvested followed by treatment with ammonium chloride Tris buffer for 3 min at 37°C to deplete the red blood cells38 52 (link). The precursors were plated in RPMI-5% FCS with GM-CSF (15 ng/ml) and IL-4 (10 ng/ml) and supplemented with 20 mM HEPES, 2 mM L-glutamine, 1 mM sodium-pyruvate, 100 IU/ml penicillin, 100 mg/ml streptomycin, 0.1 mM non-essential amino acids and 5 × 10−5 M β-mercaptoethanol in 6-well plates. Cells were maintained at 106/ml, 3 ml/well and incubated at 37°C and 5% CO2. After 3 days the floating cells (mostly granulocytes) were removed and the adherent cells replenished with fresh GM-CSF and IL-4 containing medium. 4 days later the non-adherent DCs were harvested, washed, pulsed with peptide (100 μM) or electroporated with RNA as described above and matured for 5 hours at 37°C in GM-CSF+IL4 RPMI-5% FCS medium supplemented with LPS (E. coli 026:B6, 100 ng/ml, Sigma).
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2

Generation of Murine Dendritic Cells

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Fresh bone marrow (BM) cells flushed from femurs and tibias were passed through 70-μm cell-strainers. After erythrocytes lysis, BM cells were incubated with supernatants from YTS169, YTS191, M5/114, RA3-3A1 followed by sheep anti-rat Dynabeads®. After magnetic separation, cells were transferred to 24-well plates in RPMI-10% FCS with 20 ng/ml mouse recombinant granulocyte/macrophage colony-stimulating factor (GM-CSF, R&D Systems), with change of medium and removal of small non-adherent cells on days 2 and 4. For maturation, 1 μg/ml LPS (E. coli 026:B6, Sigma) was added on day 6 for the final 12 h.
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3

Peptide Synthesis and Antimicrobial Assay

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Fluorenylmethoxycarbonyl (F-moc)-protected
amino acids used were from Novabiochem AG, Switzerland and Advanced
Chemtech, Louisville, KY, USA. Coupling reagents used in peptide synthesis
were N-hydroxybenzotriazole hydrate (HOBt) (Advanced
Chemtech), 2-(1-H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium
hexafluorophosphate (Advanced Chemtech), and N,N-diisopropylethylamine (Sigma). Myristic acid used for
acylation of peptides. LPS E. coli K-235
and LPS E. coli 026:B6 were from Sigma.
HBD2-3 were purchased from Peptides International (Louisville, KY).
LL37, melittin, alamethicin, gramicidin A, and gramicidin S were from
Sigma. UV spectroscopic grade methanol and acetonitrile were from
Spectrochem Pvt Ltd., India.
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4

ADAMTS5 Expression in LPS-Stimulated EFLS

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EFLS (n = 3) cells were cultured with and without 10µg/ml LPS (E. Coli 026:B6, Sigma–Aldrich, Poole, UK) for 6 or 16 h. Culture media was collected, the cells washed using PBS, and lysed in 1× SDS sample‐loading buffer (62.5 mM Tris–HCl, pH 6.8 at 25°C, 2% w/v SDS, 10% glycerol, 50 mM DDT, 0.01% w/v bromophenol blue, or phenol red). Cell lysate and culture media protein concentrations were measured using the Pierce™ 660 Protein Assay (Life Technologies; Carlsbad, CA). Protein (40 µg) was extracted from each culture media sample using StrataClean™ Resin according to manufacturer protocol and eluted by boiling in 15 µl 1× SDS sample buffer. Cell lysate and culture media protein samples were run on SDS‐PAGE gels and blotted onto nitrocellulose membranes, which were then probed using a sheep anti‐mouse ADAMTS5 antibody (a kind gift from Amanda Fosang, Melbourne Australia)14 at a dilution of 1:500 followed by an anti‐goat/sheep IgG‐peroxidase secondary antibody at a dilution of 1:1000 (A9452; Sigma–Aldrich). Antibody localization was visualized using Western Lightening‐Plus chemiluminescence reagent (Perkin Elmer, Beaconsfield, UK), and imaged on a UVP ChemiDoc‐it imaging system. Intensity of bands was quantified using imageJ software.
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5

LPS and CpG-DNA Stimulation Assay

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LPS (E. coli 026:B6) and 1826-CpG DNA (5′-TsCsCsAsTsgsAsCsgsTsTsCsCsTsgsAsCsgsTsT-3′) were purchased from Sigma (St. Louis, MO) and TIB Molbiol (Berlin, Germany), respectively. YB-1 antibodies were obtained from Cell Signaling Technology (Danvers, MA) and Santa Cruz Biotechnology (Santa Cruz, CA). Actinomycin D (Act. D) and Trichloroacetic acid (TCA) were purchased from Sigma.
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6

RANKL-Induced NF-κB Activation Protocol

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PUN (purity ≥98%) was obtained from Sigma-Aldrich (St. Louis, USA) and dissolved in phosphate-buffered saline (PBS). PBS was used as the vehicle control. Recombinant RANKL was purchased from R&D Systems (Minneapolis, USA). Minimal essential medium (DMEM/high glucose) and fetal bovine serum (FBS) were purchased from HyClone (Logan, USA). LPS (E. coli 026: B6) was obtained from Sigma-Aldrich. Primary antibodies to phospho-NF-κB p65 (#3033), phospho-IκBα (#2859), NF-κB p65 (#8242), IκBα (#4814), phospho-ERK (#4370), phospho-p38 (#4511), phospho-JNK (#4668), ERK (#4695), p38 (#8690), and JNK (#9252) were purchased from Cell Signaling Technology (Boston, USA). Anti-rabbit and anti-mouse HRP-conjugated secondary antibodies were obtained from Multi Sciences (Shanghai, China). A CCK-8 assay kit was purchased from ApexBio (Boston, USA).
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7

Anti-inflammatory Molecular Mechanisms

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The LPS (E. coli 026:B6) and Griess reagent were obtained from Sigma (St. Louis, MO, USA). Glycyrrhizic acid, liquiritigenin, berberine, baicalin, baicalein, forsythiaside-A and poncirin were also purchased from Sigma. Enzyme-linked immunosorbent assay (ELISA) kits for tumour necrosis factor-alpha (TNF-α), interleukin (IL)-6 and IL-1β were acquired from Pierce Endogen (Thermo Scientific, Waltham, MA, USA). The PGE2 ELISA kit was obtained from R&D Systems (Minneapolis, MN, USA). The primary antibodies for the phospho (p)-inhibitor of NF-κB α (I-κBα), p-ERK, p-jun NH2-terminal kinase (JNK), p-p38, ERK, JNK and p38 antibodies were purchased from Cell Signaling (Danvers, MA, USA). COX-2 and iNOS antibodies were obtained from BD Biosciences (San Jose, CA, USA), while the NF-κB, IκBα, β-actin and lamin A/C antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
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8

Murine Dendritic Cell Differentiation

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Fresh bone marrow cells flushed from femurs and tibias were passed through 70-µm cell-strainers. After erythrocytes lysis, BM cells were incubated with supernatants from YTS169, YTS191 (anti-CD4; Therapeutic Immunology Group, Oxford, UK), M5/114, and RA3-3A1, followed by sheep anti-rat Dynabeads®. After magnetic separation, cells were transferred to 24-well plates in the presence of 20 ng/ml mouse recombinant granulocyte/macrophage colony-stimulating factor (GM-CSF; R&D Systems). On days 2 and 4, medium containing small non-adherent cells was removed and replaced with fresh GM-CSF-containing medium. For maturation, 1 µg/ml LPS (E. coli 026:B6, Sigma) was added on day 6 for the final 12 h.
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9

LPS, IFN-γ, MPP+, and Rotenone Treatments

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LPS and IFN-γ treatment: Cells were treated with 100 ng/ml LPS (E. coli 026:B6, Sigma-Aldrich, St. Louis, MO, USA) and 0.1 ng/ml IFN-γ (Sigma-Aldrich) for 6 h or 24 h. Stock solutions of 1 mg/mL LPS in a serum-free culture medium and 10 μg/mL IFN-γ in a serum-containing culture medium, were prepared and stored at −20°C.
MPP+ and rotenone treatment: Cells were treated with 10, 25, 50 and 100 μM MPP+ or 20, 40, 100 and 150 nM rotenone (both from Sigma-Aldrich) for 6 h or 24 h, in the absence or presence of LPS/IFN-γ. Stock solutions of 50 mM MPP+ in milliQ H2O and 10 mM rotenone in DMSO were freshly prepared on the day of treatment. DMSO in the cell cultures was always below 1/1,000.
Treatments were added directly to the culture medium.
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10

Mitochondrial Stress Response Pathway

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LPS (E.coli 026:B6) and ATP (A1852) were obtained from Sigma-Aldrich. MitoTracker GreenFM (M7514) and MitoTracker Deep RedFM (M22426) were purchased from Invitrogen. Antibody against Tfam (Sc-166,965) was obtained from Santa Cruz Biotechnology. Antibody against NLRP3 (AG-20B-0014-C100) were obtained from AdipoGen. Antibody against IL-1β (AF-401-NA) was obtained from R&D Systems. Antibody against GAPDH (10R-G109a) was obtained from Fitzgerald. Antibody against TOM20 (HPA011562) was obtained from Sigma-Aldrich. Alexa Fluor 488 Donkey anti-mouse IgG (A-21202) and Alexa Fluor 594 donkey anti-rabbit IgG (A-21207) were obtained from Invitrogen.
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