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6 protocols using mettl3

1

Protein Expression and Methylation Analysis

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Reverse transcription-quantitative PCR (RT-qPCR) and western blot methods were described previously 20 . The oligos and primers used in this study were listed in table S1. Moreover, the primary antibodies used in this study were as follows: GAPDH (cat. no. 2118, 1:1,000; Cell Signaling Technology), histone H3 (cat. no. 4499t, 1/1,000; Cell Signaling Technology), METTL16 (cat. no. A15894, 1/1,000; ABclonal), E-cadherin (cat. no. 20874-1-AP, 1/10,000; Proteintech), N-cadherin (cat. no. 66219-1-Ig, 1/5,000; Proteintech), ZO-1 (cat. no. 21773-1-AP, 1/5,000; Proteintech), DVL2 (cat. no. 12037-1-AP, 1/5,000; Proteintech), β-catenin (cat. no. A19657, 1/1,000; ABclonal), Phospho-β-catenin-S45 (cat. no. AP0580, 1/1,000; ABclonal), METTL3 (cat. no. A8370, 1/1,000; ABclonal), and METTL14 (cat. no. 26158-1-AP, 1/1,000; Proteintech).
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2

Colorectal Cancer Cell Line Culture

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Human CRC cell lines SW480, SW620, DLD1, RKO were obtained from the American Type Culture Collection (ATCC). All cells were routinely cultured in RPMI 1640 (Invitrogen; 11875–093) or DMEM (Invitrogen; 11965–092) supplemented with 10% fetal bovine serum. All cells were incubated at 37 °C with 5% CO2 and 95% humidity. The following antibodies were used for western blotting and IHC: HSF1 (12972S, Cell Signaling Technology, CST; ab52757, Abcam); β-catenin (8480S, CST); β-actin (4970 L, CST); FLAG (F1804–1, Sigma); cyclinD1 (ab134175, Abcam); Cleaved PARP1 (9541-s, CST); METTL3 (a8370, Abclonal); GLS1 (ap8809b, Abgent). Pyrvinium (P0027), LiCl (793620), cycloheximide (R750107), chloroquine (C6628), MG132 (474790) and PD150606 (D5946) were purchased from Sigma-Aldrich.
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3

Comprehensive Protein Expression Analysis

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WB analysis was performed as previously described.24 (link) The primary antibodies were employed: CBX2 (Proteintech, China), CDK4/6 (Proteintech, China), cyclin D1 (Proteintech, China), Flag (Sigma-Aldrich, USA), Ha (Abmart, China), Mettl3 (Abclonal, China), and GAPDH (Abcam, England).
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4

Proteomic Analysis of Cellular Signaling

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RIPA buffer (with PMSF and phosphatase inhibitor) was used to extract whole-cell lysates. Briefly, equal amounts of protein samples were separated via SDS-PAGE and transferred to polyvinylidene fluoride membranes. The targeted proteins were detected using different antibodies, including GAPDH (1:1000, Proteintech, USA), IGF2BP3 (1:1000, Proteintech, USA), AKT1 (1:1000, Cell Signaling Technology, USA), P-AKT1(ser473) (1:1000, Cell Signaling Technology, USA), KLK5 (1:1000, #abs136657, Abisin, Shanghai), PAR2 (1:1000, Abclonal Technology Co., Ltd.) and METTL3 (1:1000, Abclonal Technology Co., Ltd.).
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5

Western Blot Analysis of Protein Markers

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Protein sample separated on SDS-PAGE, transferred onto 0.45 μm PVDF membranes (Millipore), blocked with 3% BSA, incubated overnight at 4 °C with primary antibodies against METTL3 (ABclonal, China), PAI-1 (Abcam), YTHDF1 (Proteintech), JUN (Cell Signaling Technology), GAPDH (Proteintech), Fibrin (Merck, Germany), and detected using chemiluminescence. Densitometry analysis was performed using ImageJ software (National Institutes of Health) by measuring the band intensity for each group, and the data were normalized to GAPDH as an internal control.
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6

Molecular Mechanisms of mRNA Modification

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ATF4 (rabbit, 11815S), p-mTOR (rabbit, 5536S), mTOR (rabbit, 2983S), p-p70S6K (rabbit, 9205S), p70S6K (rabbit, 2708S), pS6 (rabbit, 4857S), LC3B (rabbit, 3868S), and sequestosome 1 (SQSTM1, rabbit, 8025) monoclonal antibodies were purchased from Cell Signaling Technology (Shanghai, China). DDIT4 (rabbit, 10638-1-AP) and YTHDF2 (rabbit, 24744-1-AP) polyclonal antibodies were purchased from Proteintech. FTO (rabbit, ab126605), WTAP (rabbit, ab195380), ALKBH5 (rabbit, ab69325), and m6A (mouse, ab208577) antibodies were purchased from Abcam. METTL3 (rabbit, a8370), and METTL14 (rabbit, a8530) polyclonal antibodies were purchased from ABclonal. Compound 968 was purchased from Sigma-Aldrich (SML1327). Actinomycin D was purchased from Selleck Chemicals (S8964). Chloroquine (CQ) was obtained from Sigma-Aldrich (C6628). Meclofenamate sodium was purchased from MCE (HY-B1320). CB839 was purchased from Selleck Chemicals (S7655).
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