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13 protocols using anti p100 p52

1

Combination Therapy Evaluation for Cancer Treatment

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Birinapant, CompA, necrostatin, and IDN-655650 were gifts from TetraLogic Pharmaceuticals. Fc-TNF was generated in-house. Q-VD-OPh (Q-VD) was purchased from MP Biomedicals. Docetaxel was purchased from ActiveBiochem. Antibodies used for neutralization assays anti-TNF (MAB610) and anti-TRAIL (MAB375) were purchased from R&D Systems. Antibodies used for immunoblotting and immunohistochemistry were purchased as follows: anti-cIAP1 (1E1-1-10) and anti-cIAP2 (16E-6-3) from Enzo, anti-XIAP (2F1) from MBL, anti-cleaved caspase-3 (Asp175) from Cell Signaling Technology), anti-NIK (Cell Signaling Technology), anti-p100/p52 (Cell Signaling Technology), anti-tubulin (DM1A) and anti-actin (AC-15) from Sigma-Aldrich, and anti-KI67 (Thermo Fisher Scientific).
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2

Western Blot Analysis of NF-κB Pathway

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Recipient splenic lymphocytes were obtained using lymphocyte separation solution (Dakewe Biotech Co., Ltd.) according to the manufacturer’s instructions. The lymphocytes were homogenized in ice-cold radioimmunoprecipitation assay lysis buffer containing phenylmethylsulfonyl fluoride (PMSF) and phosphatase inhibitor. Lysates were centrifuged at 12,000 g and 4°C for 25 min, and the supernatant was subsequently collected. Total proteins were quantified by bicinchoninic acid assay. Thereafter, 20 µg proteins were separated via 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a polyvinylidene difluoride membrane. After being blocked with 5% milk for 1 h, the membrane was incubated at 4°C overnight with the following primary antibodies (all from Cell Signaling Technology, Inc.): anti-P100/P52 (1:1,000; #4882), anti-RelB (1:1,000; #10544), and anti-β-actin (1:1,000; #3700). The membranes were washed using Tris-buffered saline with Tween-20 and incubated with horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (1:5,000; Abcam) at room temperature for 1 h. The proteins were visualized using an enhanced chemiluminescence system (Thermo Fisher Scientific, Rockford, IL, USA). Band intensity was analyzed using ImageJ software and normalized to the value of β-actin.
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3

NF-κB Signaling in Malt1-Deficient MEFs

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Malt1+/− and Malt1−/− MEFs were obtained from Jürgen Ruland (Technische Universität Munich, Munich, Germany). Malt1+/− and Malt1−/− MEFs were stimulated with 100 ng/ml murine soluble TNF (mTNF) (R&D Systems). Cytoplasmic and nuclear extracts were prepared using a nuclear protein extraction kit according to the manufacturer's instructions (Active Motif, Belgium). Immunoblots were probed with primary anti-p65 (Santa Cruz Biotechnology), anti-RelB (Cell Signaling), and anti-p100/p52 (Cell Signaling).
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4

Comprehensive Western Blot Analysis of Cell Death Signaling

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Western blot was performed as described [21 (link)]. Primary antibodies used were anti-actin (1:2000 MP Biomedicals C4), anti-caspase-8 (1:300 Cell Signaling #9746 and 1:300, Abcam ab32125), anti-caspase-3 (1:1000 Cell Signaling #9662), anti-caspase-7 (1:400 Cell Signaling #12827), anti-RIP1 (1:500 BD Biosciences 610458), anti-XIAP (1:400 BD Biosciences 610762), anti-cIAP1 (1:200 R&D Systems AF8181), anti-p100/p52 (1:500 Cell Signaling #4882) and anti-c-FLIP (1:400 Cell Signaling #5634). Secondary horseradish peroxidase-labeled antibodies were from GE Healthcare and Dako and were used at 1:5000 dilutions. For the chemiluminescent reaction, Supersignal Substrate (Thermo Scientific) was used. Chemiluminescence was detected with a LAS-1000 CCD camera and Image Reader LAS-1000 Pro v2.6 software (Fujifilm, Tokyo, Japan) or an Amersham Imager 600 (GE Healthcare, Chicago, IL, USA).
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5

Analyzing NF-κB Signaling in CLL

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Western blot analysis was performed using standard techniques. Membranes were probed with the following antibodies: anti-p100/p52 (Cell Signaling Technology, #4882), p-p65 (Cell Signaling Technology, #3033), p-S6 (Cell Signaling Technology, #5364), actin (Santa Cruz Biotechnology, # sc-1616), Bim (StressMarq, #SPC-113D). Odyssey Imager (Li-Cor Biosciences) was used as a detection method according to the manufacturer’s protocol. Nuclear extracts of CLL cells were prepared using NE-PER kit (ThermoFisher, Waltham, Massachusetts, USA). Transcription factor activity of p52 and p65 was accessed using TransAM NF-κB Family Kit (Active Motif, Carlsbad, United States).
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6

Western Blot Analysis of NF-κB Pathway

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Western blotting was performed as previously described (McDonald et al., 2007 (link)) using anti–phospho IκBα (Cell Signaling Technology), anti–mouse full-length IκBα (Abcam), and anti-actin (Sigma-Aldrich) according to the manufacturers’ recommendations. Immunoblotting was also performed using anti-p100/p52, RelB, and NIK (Cell Signaling Technology). Sheep anti–mouse horseradish peroxidase–conjugated and sheep anti–rabbit horseradish peroxidase–conjugated secondary antibodies were obtained from GE Healthcare. Quantification was performed using the public domain ImageJ/FIJI software from the National Institutes of Health.
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7

Immunoblot Analysis of NF-κB Pathway

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Immunoblots were performed as previously described [46 (link)] with the following primary antibodies: anti-GAPDH (sc-32,233, Santa Cruz), anti-p100/p52 (4882 or 37,359 S, Cell Signaling), anti-p105/p50 (D4P4D, Cell Signaling), anti-lamin (4777 S, Cell Signaling) anti-p65 (D14E12, Cell Signaling), anti-RelB (10,544 S, Cell Signaling), anti-IKKα (2682 S, Cell Signaling), anti-NIK (4994 S, Cell Signaling), anti-HA (sc-7392, Santa Cruz), anti-Actin (sc-8432, Santa Cruz), anti-CYPA (sc-134,310, Santa Cruz), anti-S100A4 (13,018 S, Cell Signaling), anti-Histone H3 (sc-517,576, Santa Cruz), anti-STAT3 (sc-482 X, Santa Cruz), and anti-phospho-STAT3 (sc-8059, Santa Cruz). All immunoblots are representative of at least two separate experiments and representative images displayed.
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8

Immunoblotting of NIK-inhibited Splenocytes

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Splenocytes treated with anti-CD40 in the presence or absence of NIK inhibitor for 72 hours were homogenized in lysis buffer (Cell Signaling Technology, Danvers, MA) with 1 mM PMSF (Beyotime Biotech, Nantong, China). The protein concentration was determined using a bicinchoninic acid (BCA) Protein Assay kit (Thermo Fisher Scientific). Immunoblotting was performed using the following antibodies: anti-GAPDH (Abcam, Cambridge, MA), anti-p100/p52 (Cell Signaling Technology), and anti-RelB (Santa Cruz Biotechnology, Santa Cruz, CA).
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9

Western Blot Analysis of Apoptosis Regulators

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Western blotting analysis was performed as previously described [65 (link)]. Anti-cleaved caspase 8 (Cat#: AF705, 0.5μg/ml) and anti-cIAP1 (Cat#: AF8181, 1:500) were obtained from R&D systems. Anti-caspase 3 (Cat#: 9661, 1:1000), anti-caspase 9 (Cat#: 9501, 1:500), anti-PARP (Cat#: 9541, 1:250), anti-xIAP (Cat#: 2042, 1:500), anti-p100/p52 (Cat#: 4882, 1:1000), anti-IκBα (Cat#: 4814, 1:2000), anti-pIκBα (Cat#: 2859, 1:1000) antibodies were obtained from Cell Signaling. Anti-cIAP2 (Cat#: NB110-57030, 1:250) was obtained from Novus. Anti-β-actin (Cat#: A5441, 1:5000) was obtained from Sigma (St Louis, MO).
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10

Analyzing Nuclear and Cytoplasmic IDO1 Signaling

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Nuclear and cytoplasmic extracts from Ido1−/− pDCs, transfected with WT and ITIM‐mutated Ido1 mRNA and incubated for 48 hr at 37°C, were prepared according the manufacturer's protocol for the TransAM Flexi NF‐κB Family Kit (Active Motif). Analysis of p52 and RelB expression was performed on normalized samples of pDCs using rabbit polyclonal anti‐p100/p52 (Cell Signaling Technology, MA, USA), anti‐RelB (Santa Cruz Biotechnology) antibodies. Anti–β‐tubulin and anti‐Lamin B1 (Thermo Fisher Scientific, Massachusetts, USA) were used as normalizers of the cytoplasmic and nuclear extracts respectively. TGF‐β production in culture supernatants from those cells was measured by means of TGF beta 1 Emax Immuno Assay System (Promega, Madison, WI 53711 USA).
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